GT8482

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT8482

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 29572939 [Map]; Strand: c
- AT1G78610.1 - [+] show detail - mechanosensitive channel of small conductance-like 6
  Distance: -813; Region: promoter
- AT1G78620.1 - [+] show detail - Protein of unknown function DUF92, transmembrane
  Distance: 0; Region: exon5 (3UTR)
- AT1G78620.2 - [+] show detail - Protein of unknown function DUF92, transmembrane
  Distance: 0; Region: exon5 (3UTR)

TAATTATGGA GACAGTAGTA AACCCATGTT AGAGAATTTA ACCAAAAAAG 
TGAAAAAACA TTGAAAAAAA GTAAGAAAAA GGGCAAGCAA GAGTCTTCTT 
CAGGCGCGCC GTGGCGGACA TTTGACTTTA AGAAAGAAAA AGCGAGATTT 
GCGCTGCGGC GGTGTAAAAA TCAGTCGTAA AATACACGCG TTTGAGGAGC 
GCGTGTGAAT TTTGACACTT GTCAGCTGTG TGTTAGACAG ATGTTGCGGC 
CCATGGGCCA TTGTCGTATC TTATTGCGGA CCACAGGTTC GTAGAAGCAA 
CGCATTGTAT AATTTTTCTT CATGTTTCAT AAGTCTAAAA GTAAACAAGC 
CTGTTAAGTC TCGCTGTCTT GTTTAACAGC TAGGCCGATG GATGCATTTT 
TCTCTAGAGG CTTCTAAATT AAAATTGGCC ACCAGAAACA CTATCTTATG 
CAACGTCGAG AATATTGCTA AAGATGACAG GAACAAGACA TAATAATGAC 
AAAAAAGAAG AATGTATTCG AGAAAATCAC GACTCTTCGA CGACTTCTTT 
CTCAACCAAT TCTTGGTACT TTGTTGTTGC CTTTTCTTCA ACTTTTTTCT 
TACATTTTCA TCACTACTTT CTCTATTTGC TACATAACTT TTTTTA

AT1G78610.1

Model type: Protein coding
Short Description: mechanosensitive channel of small conductance-like 6
Computational Description: mechanosensitive channel of small conductance-like 6 (MSL6); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 3617 Blast hits to 3602 proteins in 1077 species: Archae - 172; Bacteria - 2574; Metazoa - 1; Fungi - 205; Plants - 217; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78620.1

Model type: Protein coding
Short Description: Protein of unknown function DUF92, transmembrane
Computational Description: Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78620.2

Model type: Protein coding
Short Description: Protein of unknown function DUF92, transmembrane
Computational Description: Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR