GT85

CSHL Arabidopsis genetrap mutant lines

Original: GT85

Phenotypes

Morphological phenotypes

Original description

  • small plants
  • tiny plants
  • tiny, dark green seedlings; low germination rate
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • decreased height (PATO:0000569)
0 seed germination stage (PO:0007057)
  • decreased frequency (PATO:0000381)
seedling (PO:0008037)
  • decreased size (PATO:0000587)
  • dark green (PATO:0001249)

Original: GT85

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28892599 [Map]; Strand: c
      • AT1G76920.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT85 - 3-prime edge 
    TGGATCGTTA CCGACCGTTT TCATCCCTAG TTCAGATTCA ATCTCGATTT 
    CCTCCCTTTC CGATCTCCTC AGCCTGTAGC TTCTTCAAGC GGATTGATCT 
    ATCTTTGGGG NGNTTCGATT GATTTAGCTG AATCTAGCAA ATCGCTCGTC 
    GCTTGTAATC CGTTAACTCG GCAGTTCAAG GTTTTGCCTC AGCTTGGCTC 
    AGCTTGGTCA CGCCATGGTA CTGTTCNTCT C

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT85 - 5-prime edge 
    CTGTGACGGT GACGGTGGTG GTTATGAGGA GGTC

AT1G76920.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Kelch repeat type 2 (InterPro:IPR011498); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G61590.2); Has 279 Blast hits to 279 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR