GT8633

CSHL Arabidopsis genetrap mutant lines

Original: GT8633

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT8633

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10324223 [Map]; Strand: w
      • AT3G27845.1 - [+] show detail - pre-tRNA
        Distance: -416; Region: promoter
      • AT3G27850.1 - [+] show detail - ribosomal protein L12-C
        Distance: -616; Region: promoter
    Flanking Genome Sequence: GT8633 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ATATGTATGT GTGTCTTTGT GTTGAGTAAG ATTATCAAGT TTATTATCAA 
    TGAAGACATT AAAGTGTTTA AACGTGTTCT TGTATTTTCT GTTTTAACAA 
    GAACAAAAAC AGAGGTTGCG AGAAAAACAG AGAGTTTGTG GTGAGAATTA 
    CAACAAACTT TATAATAAGA CAAACACTAG AAATGAAAAA AGCACCTTAT 
    ATGTGTCTCT TGAAACAAAT AAATGGATCT ATGAAAGTCT AGAAAAGAAA 
    AGAAAACACA TCATATTTTA AAAACTCCGA TTGTTAAAAC TTAAACAATG 
    GAAACCTTGG CACCAGGTTC TTCGAGCTGT GTCTTGCTTC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10324278 [Map]; Strand: w
      • AT3G27845.1 - [+] show detail - pre-tRNA
        Distance: -361; Region: promoter
      • AT3G27850.1 - [+] show detail - ribosomal protein L12-C
        Distance: -561; Region: promoter
    Flanking Genome Sequence: GT8633 - 5-prime edge 
    TTTCTCCCTG CATACATATA GTGGTTTAGC TCCACTTGCT ACACTACACA 
    TACTTAGACT CTAGACCACA TCATTGTCCT AAGACTTACA TGACCTACTT 
    AGCTATGTTG GAACTCCCAA CTCCTTAATT CACTCTTACA CAACATCTTT 
    AGACTCTATC TTAGACTAAC AACCCAACAC TCATTAACTA AACATATTTG 
    AGCCTAATTC ATCTGCAGCC CATTACAACA AAACACAAAG CCCAACATCT 
    CTTCTGTTGA CTTTGTTCCT TCCTCTTCAT CTCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10324276 [Map]; Strand: w
      • AT3G27845.1 - [+] show detail - pre-tRNA
        Distance: -363; Region: promoter
      • AT3G27850.1 - [+] show detail - ribosomal protein L12-C
        Distance: -563; Region: promoter
    Flanking Genome Sequence: GT8633 - 5-prime edge 
    TACTTTCTCC CTGCATACTA TAGTGGTTTA GCTCCACTTG CTACACTACA 
    CATACTTAGA CTCTAGACCA CATCATTGTC CTAAGACTTA CATGACCTAC 
    TTAGCTATGT TGGAACTCCC AAACTCCTTA ATTCACTCTT ACACAACATC 
    TTTAGACTCT ATCTTAGACT AACAACCCAA CACTCATTAA CTAAACATAT 
    TTGAGCCTAA TTCATCTGCA GCCCATTACA ACAAAACACA AAGCCCAACA 
    TCTCTTCTGT TGACTTTGTT CCTTCCT

AT3G27845.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Pro (anticodon: TGG)
Link
InterPro Scan - TAIR

AT3G27850.1

Model type
Protein coding
Short Description
ribosomal protein L12-C
Curator Summary
50S ribosomal protein L12-C
Computational Description
ribosomal protein L12-C (RPL12-C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: defense response to bacterium, translation; LOCATED IN: in 6 components; EXPRESSED IN: juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12-A (TAIR:AT3G27830.1); Has 8543 Blast hits to 8543 proteins in 2749 species: Archae - 0; Bacteria - 5675; Metazoa - 193; Fungi - 132; Plants - 248; Viruses - 0; Other Eukaryotes - 2295 (source: NCBI BLink).
Link
InterPro Scan - TAIR