GT8741

CSHL Arabidopsis genetrap mutant lines

Original: GT8741

Phenotypes

Morphological phenotypes

Original description

  • very tiny plants
  • embryo lethal
  • small plants with chlorotic leaves and cotyledons
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • decreased height (PATO:0000569)

Original: GT8741

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2628931 [Map]; Strand: c
      • AT5G08160.1 - [+] show detail - serine/threonine protein kinase 3
        Distance: -821; Region: promoter
      • AT5G08160.2 - [+] show detail - serine/threonine protein kinase 3
        Distance: -821; Region: promoter
      • AT5G08170.1 - [+] show detail - porphyromonas-type peptidyl-arginine deiminase family protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT8741 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATTG GATCACCGAA 
    TTGTGGAGCG ATTATTCCTC CATTGGCGAT GTAGAAATTC ACATACGATG 
    CTGCGAGTCT TGTCCCTGCA AGTCTTGGTA TAGCTTCACC ATCCTGCAAC 
    AATGAAATCG ATGAAATATT TGTTTCAAAA CAACTTCAAA AGATTGAGTT 
    TTATCTAGTC AGTATTCATT ACCTGAGTGA TTCCAGACGA TTCTTCTTCA 
    GTCATATAAA GGGGTTCCGG GATATAAAGT TTAATGACTT GAATCTTCCT 
    TCCACGAGCA TCAATCGAAT TCGACAAAAC CGAAAGAGCT TCCACAGACC 
    TTTCGTATTG AGGATCGGTT TCAT

AT5G08160.1

Model type
Protein coding
Short Description
serine/threonine protein kinase 3
Curator Summary
Encodes a serine/threonine protein kinase.
Computational Description
serine/threonine protein kinase 3 (PK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G32850.2); Has 44052 Blast hits to 43588 proteins in 1953 species: Archae - 71; Bacteria - 7210; Metazoa - 16296; Fungi - 5509; Plants - 6936; Viruses - 48; Other Eukaryotes - 7982 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G08160.2

Model type
Protein coding
Short Description
serine/threonine protein kinase 3
Curator Summary
Encodes a serine/threonine protein kinase.
Computational Description
serine/threonine protein kinase 3 (PK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G32850.2); Has 37972 Blast hits to 37793 proteins in 1677 species: Archae - 67; Bacteria - 5765; Metazoa - 14817; Fungi - 4512; Plants - 5796; Viruses - 46; Other Eukaryotes - 6969 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G08170.1

Model type
Protein coding
Short Description
porphyromonas-type peptidyl-arginine deiminase family protein
Computational Description
EMBRYO DEFECTIVE 1873 (EMB1873); CONTAINS InterPro DOMAIN/s: Agmatine deiminase (InterPro:IPR017754), Peptidyl-arginine deiminase, Porphyromonas-type (InterPro:IPR007466); Has 2547 Blast hits to 2545 proteins in 784 species: Archae - 10; Bacteria - 1723; Metazoa - 8; Fungi - 32; Plants - 53; Viruses - 9; Other Eukaryotes - 712 (source: NCBI BLink).
Link
InterPro Scan - TAIR