GT8815

CSHL Arabidopsis genetrap mutant lines

Original: GT8815

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT8815

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11571195 [Map]; Strand: c
      • AT1G32160.1 - [+] show detail - Protein of unknown function (DUF760)
        Distance: 808; Region: intergenic
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: -4125; Region: intergenic
    Flanking Genome Sequence: GT8815 - 5-prime edge 
    CAACTGCATC ATCTTCTAAA GAGGGTTGAC CTTATACAAG AGCATTTGCA 
    TGTGGATTTC ATCATTACTA GTGAGAGAGT AAACTAATCC GTATTTAAAC 
    TCCACTATTA CACTTATTGT TATTTTTAAA CTGAAAAATT AATAATTGAA 
    TAATCTATGT TTCAGGTTTT AACTATTTGA AGTCTTAAAG AAAACAATGA 
    GAATTTAGGG GAAAAGAGTG TCTTGGAAGA CATATAAATA GGCTAAATTA 
    GATAATTGTT ATTTTGGATT GCTAATATAT TAGTATATAG AAGTGCTAAT 
    GATTATCTAC TCAATATCAT CGATTTTAGA GATGCCTTAA AAATGAAGCT 
    AGGAACATTA TCTATTCGAA GAAGCTTATT ATAATATGTA ACTCACTAGG 
    GTCTTGATCC ATATTATATA GTACAAACAT AATCCACATA ACAATAATTG 
    AGGATGTTCT TCTCTCTCG

AT1G32160.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF760)
Computational Description
Protein of unknown function (DUF760); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT1G48450.1); Has 138 Blast hits to 138 proteins in 25 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G32170.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 30
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR4)
Computational Description
xyloglucan endotransglucosylase/hydrolase 30 (XTH30); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 29 (TAIR:AT4G18990.1); Has 2058 Blast hits to 2046 proteins in 299 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 398; Plants - 1344; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR