GT8827

CSHL Arabidopsis genetrap mutant lines

Original: GT8827

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT8827

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3679650 [Map]; Strand: w
      • AT1G11030.1 - [+] show detail - pre-tRNA
        Distance: -802; Region: promoter
      • AT1G11040.1 - [+] show detail - HSP40/DnaJ peptide-binding protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT8827 - 5-prime edge 
    TTTTTCGTTC CCTACTCCTT CTATGTGATC TTCGTCCCTT TGCTTCCAGC 
    CCGGTTGGAT ATTCACTCTT AACATTTCTT CTTGTTGCAT AATCAATCTG 
    TTAAAAAAAA ACAGAACATA ATGAATGACT CATTGAGTAA AATAAGAGAA 
    CGTGAGAGCC AAGAAACAAA CCCTTCATCG GTAATAATGT CTCTTTTGAT 
    CTTGATGTTC TTGCTCTACC CTGGCAGAGT TCTTCTAACG TACACTCAAG 
    CTTTTTCTCC ACAGCTGGTG GTTTTTTCGG CGGGGTAGAC TGCGAAAACA 
    CTATCGGCGT TGTGCTTCTC CGGCTTATAC TCTTTGCAAT TGATCCAGCC 
    GTATCCCTCG TGCTCTTACT CTTTGAATAT GGCAGAGAGG TCGATGTCGC 
    CGAGCTCGTA AAGCCTCTTT CATCCTTATC TCTCTTGCTA GCACTCTTCG 
    AAATCGACGA AGGAGAAGAT TGTTTGACGC CGTTTATCGG ACTATTGCTT 
    GTAGGAGACG AAAGTTTCTT TACAGATCCG AATAAATCAC CTAAGGTTTG 
    ATCTTTTCCT CTAGGACTCG TGAAAGGTGA CGTCATCGGA CTGGTGTTGT 
    TTGAGATGGG ACGTGATTTC AAACC

AT1G11030.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: TCG)
Link
InterPro Scan - TAIR

AT1G11040.1

Model type
Protein coding
Short Description
HSP40/DnaJ peptide-binding protein
Computational Description
HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G44160.1); Has 19507 Blast hits to 13358 proteins in 2831 species: Archae - 102; Bacteria - 8184; Metazoa - 2012; Fungi - 1146; Plants - 786; Viruses - 38; Other Eukaryotes - 7239 (source: NCBI BLink).
Link
InterPro Scan - TAIR