GT8829

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

dwarf mutant

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT8829

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 14569117 [Map]; Strand: w
- AT4G29740.1 - [+] show detail - cytokinin oxidase 4
  Distance: 0; Region: exon4 (3UTR)
- AT4G29740.2 - [+] show detail - cytokinin oxidase 4
  Distance: 0; Region: exon5 (CDS)
- AT4G29750.1 - [+] show detail - CRS1 / YhbY (CRM) domain-containing protein
  Distance: -611; Region: promoter

TGGACCAAAT GGGATGATTT TTTGAGAAAG AAAATTATGT TTGATCCCAA 
AAGACTTTGT CTCCAGGACA AGACATATTT AATTAACTTA TCACATGTCT 
TAATTAATTT GTTATGTAAC TTTAGAACGT GTCTTTATAA CATATACAGA 
CAAGTACGTT CATCGTCTAA CTAACAAATA TTATAGTTTA GTGATTTGGT 
TAGGCTACTT ACGTTAATCT TTTCCGTTCT TGTATGAAAT ATGTTGTATA 
AGTTAAAAGA CAAAGAAAAA TATATTGTTA TAGCGGTATA GGCCTCTCAG 
AAATTAAGAA CCAATTATTT CTTTTATTAA GAATTTTTAT GTGGTTAAAA 
ATTACTAAGA AATATACAAA ATTTTCTAAA TTTGAAAGTA AATTAAGAAC 
CTGTTTTATT AAGAAAAATT TCGATAATAT CTGTCAAAAA AAAACAATTC 
CCATAACTTT TTAACTATTT TCCTTTTTAC AAAATCTTCT CAAAAAAACT 
GTGTGTTATT TGGAAATTCA AAACGTTTTC GTTTAGAATT AGTACAAAGT 
TCTCTTCATG GGCCAAAAAT TCAAAACGCT GTCGCTTTTA AATTAGTACA 
AAGTTCTCGT CCTTAGCCAA ATGCA

AT4G29740.1

Model type: Protein coding
Short Description: cytokinin oxidase 4
Curator Summary: It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description: cytokinin oxidase 4 (CKX4); FUNCTIONS IN: primary amine oxidase activity, cytokinin dehydrogenase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase 2 (TAIR:AT2G19500.1); Has 4201 Blast hits to 4198 proteins in 819 species: Archae - 66; Bacteria - 2589; Metazoa - 17; Fungi - 1008; Plants - 315; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G29740.2

Model type: Protein coding
Short Description: cytokinin oxidase 4
Curator Summary: It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description: cytokinin oxidase 4 (CKX4); FUNCTIONS IN: primary amine oxidase activity, cytokinin dehydrogenase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase 2 (TAIR:AT2G19500.1); Has 4206 Blast hits to 4200 proteins in 818 species: Archae - 66; Bacteria - 2585; Metazoa - 17; Fungi - 1008; Plants - 323; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G29750.1

Model type: Protein coding
Short Description: CRS1 / YhbY (CRM) domain-containing protein
Computational Description: CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3A (TAIR:AT3G23070.1); Has 408 Blast hits to 338 proteins in 45 species: Archae - 2; Bacteria - 2; Metazoa - 32; Fungi - 6; Plants - 353; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link: InterPro Scan - TAIR