GT8860

CSHL Arabidopsis genetrap mutant lines

Original: GT8860

Phenotypes

Morphological phenotypes

Original description

  • sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8860

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17976755 [Map]; Strand: c
      • AT3G48520.1 - [+] show detail - cytochrome P450, family 94, subfamily B, polypeptide 3
        Distance: -85; Region: promoter
    Flanking Genome Sequence: GT8860 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAAGTATTG CGTGTGTGTA 
    TATAAAAAGG GAAAGGTGGC GGGTCCGGAC CAATCTGTCC CGAAACATAT 
    CGCTTTTACT ATTAATTTGA TTTCTTATAT CACATTTTGA TCGACGTAAC 
    ACGGAATTAT ACTATTATGT GTCTACGGAG ATATTATTTT ATCTCCTTTT 
    TTGTCTGTAG TGAAACTGGA TGTCACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13937597 [Map]; Strand: c
      • AT5G35770.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT8860 - 5-prime edge 
    NNNNCGCAGC TTGGTACCGA GCTCGGATCC ACTAGTAACG GCCGCCAGTG 
    TGCTGGAATT CGCCCTTTAC GATAACGGTC GGTACGGGAT TTTCCCATCC 
    TACTTACGTC CCTGCATCTA TGGCAACTAC TATCTCGCCA AGTTTGGGCA 
    AGAACACATT TGATGCACGA CACGTGGCGG GACGAGTTCA TCTACCGTCA 
    TCGGACGGCT AGAAACTTCC GGACGCGTAC TCACACCTAC TTCATCTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22131477 [Map]; Strand: w
      • AT5G54510.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT8860 - 5-prime edge 
    AGCTCAATGA TCGGAGTCAA ACTTCACACG CCTTGGTGTC TTGTACTGAT 
    TGATCGATGC ACCCAAGACT CATCGCATAA TCCATGAGCT TATCGAAAGT 
    CCCTGACTCG ACCATAAAGA TCTCCAATGG TCCAATGGAC TTATCACTGA 
    CCCTTCCCTG TCTATACACA CAGAAAAGTG ATTCCTCTAT GGTTAAACAG 
    CAATCCTCGA AGACCGAGGG AGGAATTGGC GTGTATACCG TTCAAGCAGA 
    GCTCCCAGAA TAAGACATAG TGGCCCGGGA TAGATGATGT GTCCGCATAG 
    CTAGTGTACT CGGAGAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17976687 [Map]; Strand: c
      • AT3G48520.1 - [+] show detail - cytochrome P450, family 94, subfamily B, polypeptide 3
        Distance: -17; Region: promoter
    Flanking Genome Sequence: GT8860 - 5-prime edge 
    CCTACTTTCT CCCTGGCAAT ACCCACCAAG AACACACACA AACACTTAAT 
    TAGCAAATAT AAAAAGCACA TTCACAAACT CTTTCCAACA CACCAACACA 
    AAAAAAAACC CAGGACCAAA AACCATTTAA CCAATATGGC ATTCCTCCTG 
    AGTTTTTGGA AACTAGCGTT TCTAAAAACC ACCACCTCCT TTTAACCTCC 
    ACCTCCAACT AAAAAAGTCC AAGAAAACCC CC

AT3G48520.1

Model type
Protein coding
Short Description
cytochrome P450, family 94, subfamily B, polypeptide 3
Curator Summary
member of CYP94B
Computational Description
"cytochrome P450, family 94, subfamily B, polypeptide 3" (CYP94B3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 94, subfamily B, polypeptide 1 (TAIR:AT5G63450.1); Has 27655 Blast hits to 27536 proteins in 1435 species: Archae - 44; Bacteria - 2616; Metazoa - 10459; Fungi - 5693; Plants - 7745; Viruses - 3; Other Eukaryotes - 1095 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35770.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development.
Computational Description
STERILE APETALA (SAP); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, megasporogenesis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54510.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).
Computational Description
DWARF IN LIGHT 1 (DFL1); FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus, auxin mediated signaling pathway, unidimensional cell growth; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G27260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR