GT8899

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT8899

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 27876841 [Map]; Strand: w
  - AT1G74140.1 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: -64; Region: promoter
  - AT1G74140.2 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: -64; Region: promoter
  - AT1G74140.3 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: -64; Region: promoter
  - AT1G74140.5 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: -64; Region: promoter
  - AT1G74140.4 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: -83; Region: promoter
Flanking Genome Sequence: GT8899 - 3-prime edge
```
GAGTTTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT CATGAGACAC 
CATGAGGTAT GTGTGTTAAA AACGTCACCT TTTTTTTAGT GCAATCAAAA 
GTGACGTCAC ACTAAACACT AGTAAAATAA AATAAAATCA CATGCTCATT 
CCCGTTTAGG AAAGTTGAAA ATTTAAACCA TAACTTTTCC ATCTCCAAAA 
TCACAATTTA CATACATCAA ATTATCAAGT AACCATAACC AGAAACTGCT 
ATATCTTATT
```
5 prime edge [+] show sequence
1. Chromosome: 1; Position: 27876945 [Map]; Strand: w
  - AT1G74140.1 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G74140.2 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G74140.3 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G74140.5 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G74140.4 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT8899 - 5-prime edge
```
TCATGCATTT GGTATAAAAA ATGAAAATTA TTCCGAATAA AAAGAGAAAA 
AATGCATGCG ATTTTCTCGA GCTTCTCTCG CAAGGTCGTC GTCAACGTTG 
GTGCTTCATC TCACCTCGAC GATAACCAAA ATGGTGAAGA AGAAGCCAAA 
CCAGAGTCGC CATCTTCTTC CTTCTCGCCT CTCATCGTGC GTGTTCAGTA 
CCCCACTTTG TTCCTTCTGC TGTATCGCGA TCGGCGAAAG TTCATGGGCC 
CTTCGCTAGC AAGTTGGGAA ACACCAACCT AAAGCTGAAA TTTGGAAATG 
TTATGGAATC TAGAGCTGGG TTCTTCAGTT CTGAGCTTCC TAGTCATGGA 
TTCGAGTCTG GTGGTTTTAC TGGGTTTCAA AAGCGGGGAT GGTATGGAAT 
CGTTTCTTTT C
```

AT1G74140.1

Model type: Protein coding
Short Description: Rhomboid-related intramembrane serine protease family protein
Computational Description: Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 861 Blast hits to 861 proteins in 374 species: Archae - 8; Bacteria - 572; Metazoa - 38; Fungi - 80; Plants - 52; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G74140.2

Model type: Protein coding
Short Description: Rhomboid-related intramembrane serine protease family protein
Computational Description: Rhomboid-related intramembrane serine protease family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G74140.3

Model type: Protein coding
Short Description: Rhomboid-related intramembrane serine protease family protein
Computational Description: Rhomboid-related intramembrane serine protease family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 760 Blast hits to 760 proteins in 306 species: Archae - 12; Bacteria - 576; Metazoa - 0; Fungi - 6; Plants - 52; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G74140.4

Model type: Protein coding
Short Description: Rhomboid-related intramembrane serine protease family protein
Computational Description: Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 707 Blast hits to 707 proteins in 311 species: Archae - 8; Bacteria - 448; Metazoa - 38; Fungi - 74; Plants - 51; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G74140.5

Model type: Protein coding
Short Description: Rhomboid-related intramembrane serine protease family protein
Computational Description: Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR