GT8899

CSHL Arabidopsis genetrap mutant lines

Original: GT8899

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8899

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27876841 [Map]; Strand: w
      • AT1G74140.1 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: -64; Region: promoter
      • AT1G74140.2 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: -64; Region: promoter
      • AT1G74140.3 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: -64; Region: promoter
      • AT1G74140.5 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: -64; Region: promoter
      • AT1G74140.4 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: -83; Region: promoter
    Flanking Genome Sequence: GT8899 - 3-prime edge
    GAGTTTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT CATGAGACAC 
    CATGAGGTAT GTGTGTTAAA AACGTCACCT TTTTTTTAGT GCAATCAAAA
    GTGACGTCAC ACTAAACACT AGTAAAATAA AATAAAATCA CATGCTCATT
    CCCGTTTAGG AAAGTTGAAA ATTTAAACCA TAACTTTTCC ATCTCCAAAA
    TCACAATTTA CATACATCAA ATTATCAAGT AACCATAACC AGAAACTGCT
    ATATCTTATT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27876945 [Map]; Strand: w
      • AT1G74140.1 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G74140.2 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G74140.3 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G74140.5 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G74140.4 - [+] show detail - Rhomboid-related intramembrane serine protease family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT8899 - 5-prime edge
    TCATGCATTT GGTATAAAAA ATGAAAATTA TTCCGAATAA AAAGAGAAAA 
    AATGCATGCG ATTTTCTCGA GCTTCTCTCG CAAGGTCGTC GTCAACGTTG
    GTGCTTCATC TCACCTCGAC GATAACCAAA ATGGTGAAGA AGAAGCCAAA
    CCAGAGTCGC CATCTTCTTC CTTCTCGCCT CTCATCGTGC GTGTTCAGTA
    CCCCACTTTG TTCCTTCTGC TGTATCGCGA TCGGCGAAAG TTCATGGGCC
    CTTCGCTAGC AAGTTGGGAA ACACCAACCT AAAGCTGAAA TTTGGAAATG
    TTATGGAATC TAGAGCTGGG TTCTTCAGTT CTGAGCTTCC TAGTCATGGA
    TTCGAGTCTG GTGGTTTTAC TGGGTTTCAA AAGCGGGGAT GGTATGGAAT
    CGTTTCTTTT C

AT1G74140.1

Model type
Protein coding
Short Description
Rhomboid-related intramembrane serine protease family protein
Computational Description
Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 861 Blast hits to 861 proteins in 374 species: Archae - 8; Bacteria - 572; Metazoa - 38; Fungi - 80; Plants - 52; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G74140.2

Model type
Protein coding
Short Description
Rhomboid-related intramembrane serine protease family protein
Computational Description
Rhomboid-related intramembrane serine protease family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G74140.3

Model type
Protein coding
Short Description
Rhomboid-related intramembrane serine protease family protein
Computational Description
Rhomboid-related intramembrane serine protease family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 760 Blast hits to 760 proteins in 306 species: Archae - 12; Bacteria - 576; Metazoa - 0; Fungi - 6; Plants - 52; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G74140.4

Model type
Protein coding
Short Description
Rhomboid-related intramembrane serine protease family protein
Computational Description
Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 707 Blast hits to 707 proteins in 311 species: Archae - 8; Bacteria - 448; Metazoa - 38; Fungi - 74; Plants - 51; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G74140.5

Model type
Protein coding
Short Description
Rhomboid-related intramembrane serine protease family protein
Computational Description
Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR