GT8913

CSHL Arabidopsis genetrap mutant lines

Original: GT8913

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8913

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2982544 [Map]; Strand: w
      • AT1G09230.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT8913 - 3-prime edge 
    TATTTTACCG ACCGTTACCG CCCGTTTTCA TCCCTAGCTG CACATGCGAC 
    ATCGGAGCCG GCCGTGAATC TCCCGGCGAC GCAATTTGAA TCTCAGGTTA 
    CAGAGCCGTT CGGGGTAACT CTTCTAGTTC GGCATCTTCC TGATGGAATT 
    CCTCATGATA TCGTCTCTCG GCTCTTTTCT CAGTACGGAG CTTCTGCTGT 
    TCGTCCTTGC TCCGGTGGAA AGTAAATTTC CAGCAACCTT TTCCTTTCTA 
    TTTACTTGGA GATTCATATT AGTAAGAAGG TTCTAGATTT CTGTAGAAGA 
    CTGAAAAGGT TATAGACAGT TTTTGTTCAC CAGGCTTTTG AATGGAATAT 
    TTAGGTTACA AGGTGGAAAG ACTTTTTGTT TACTCTAGAG AATGTGGAAT 
    TGCTCTAACT TGACATATAA TCCTACTTGT CACAGATTGA GAAACGCTGC 
    TTTTGTGGAT TTCAAGAATG AAGCTTTTGC TTCTCAAGCA CATCGTCAAT 
    TAAATGGGTA CCAGTTTCGG ATTTACTCAT CTTCCATTAA TATGCTCAGA 
    CTCTTTTTTG TTTCTTGACA AAAGCCAATG ATTGAGCTGT TTGATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2982644 [Map]; Strand: w
      • AT1G09230.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -20; Region: promoter
    Flanking Genome Sequence: GT8913 - 5-prime edge 
    TCGAAAACCC AAACTCATAA CGATGACATG TTCTTTTCAA TAACATTGAT 
    TTGGGAGATT AAACCGGACT AGACTTTGGG GTAAGTTACC GAACCAGAAA 
    AACCAAGAGA GAAGATTGAA TCAAACCGGG GAGACGTTTT GTTTTAAAGT 
    GTATGGGCTT TTCCACACAT GTGGCCCATT AAAATGTTTT TTTTTTGGTT 
    AACAAACCTA TTTTTTTACT TTTGGCAAAT GGCAACAATA ATTTAAATTT 
    TCAGTAATAT ATTTGGTTAC TTTAATGGAT AAATAAATTT AACTTTCCAA 
    AAAAAAAAAA TCATTTGTTT GGTTTTTATG GAACCTGGGG AAAAAAATTA 
    TTTTTTAAAA AAAAAAAAAA TAAACGGGGG AAGGGGCAAT GGAATCCAAT 
    AAAAAAAAAA ATTTTTTTTG GAAGGGAAAT TTATTTTAAA AGGGTCCTTG 
    GATAAAATTT TTTTTTTTTA TCCGTTTAAA AAATTTAAAA TTGAAAAATT 
    TTTGGAAGTT T

AT1G09230.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 908 Blast hits to 898 proteins in 138 species: Archae - 0; Bacteria - 6; Metazoa - 655; Fungi - 76; Plants - 104; Viruses - 1; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR