GT8977

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT8977

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 19287183 [Map]; Strand: c
  - AT3G51980.1 - [+] show detail - ARM repeat superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT3G51990.1 - [+] show detail - Protein kinase superfamily protein
    Distance: -695; Region: promoter
Flanking Genome Sequence: GT8977 - 3-prime edge
```
TATCTGTAAC TCATCCAAAG ACATCTTCTC TGCATCTTTA GCTGCTTCCT 
TCAATGTCGC AGGATCCGAG TGACCTAACC GAAGATATCC AACATAGAAT 
CAGATCTAAA TGAAATTAGT GAGGAAGAAG GACACTGAGA AAGAAAATTT 
ACCTATTGCC CAGTGTAACA TCCCATCAAG TGAAGAGAAT CCACCATCGA 
TTTGATCTTG CTCTCCGATC ACCACACCGG AATCTTCTAC CAATTCGGCT
```
3 prime edge [+] show sequence
1. Chromosome: 3; Position: 19287183 [Map]; Strand: c
  - AT3G51980.1 - [+] show detail - ARM repeat superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT3G51990.1 - [+] show detail - Protein kinase superfamily protein
    Distance: -695; Region: promoter
Flanking Genome Sequence: GT8977 - 3-prime edge
```
TATCTGTAAC TCATCCAAAG ACATCTTCTC TGCATCTTTA GCTGCTTCCT 
TCAATGTCGC AGGATCCGAG TGACCTAACC GAAGATATCC AACATAGAAT 
CAGATCTAAA TGAAATTAGT GAGGAAGAAG GACACTGAGA AAGAAAATTT 
ACCTATTGCC CAGTGTAACA TCCCATCAAG TGAAGAGAAT CCACCATCGA 
TTTGATCTTG CTCTCCGATC ACCACACCGG AATCTTCTAC CAATTCGGC
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 19287040 [Map]; Strand: c
- AT3G51980.1 - [+] show detail - ARM repeat superfamily protein
  Distance: 0; Region: intron2 (CDS)
- AT3G51990.1 - [+] show detail - Protein kinase superfamily protein
  Distance: -838; Region: promoter

TACGGACTTT GTGATTTTGG TTTTTAATTT CTGATTGCTT TGTCTCTGGA 
AGTTCATGAA AGTGCTCTTA TATAGGAGCT GGTGGAGAAG CTGAAAATGC 
CGTCGAATGC GAAGTTGATG CAAATAGCGA TAGATGACTT GAATAATTCA 
TCCTTGTCTC TTGAAGATCG TCACCGTGCT TTGCAGGAAC TTTTGATCCT 
CGTTGAACCT ATTGATAATG CAAATGGTAA CTGGAAGCTT GTAACTTGCT 
ATTGAATCTT GTATATATAA ATGTGTTTGT GTTACAGTTT CACATGAGTC 
TGATCAATTG TGGCATCATT CTTTTCTTGT GTAGATTTGA GCAAATCAGG 
AGGGCTTAGA GTTGTAGCAG GAGAGCTTAA TCATGATGAC ACAGAAGTAA 
GGAAACTAGC TGCGTGGGTG CTCGGGAAAG CTAGCCAAAA CAATCCTTTT 
GTTCAAGAGC AGGTTTGATT TCGTTGTACT TGTAGAGCAG AACCGTGTGT 
TGAAGTATAA ACCGTCTGAA ACACATCATG TTTCTTGTTC TGTGAATTTG 
GTTACAGGTT CTTGAACTTG GAGCTTTAAC AACACTAATA AAGATGGTAA 
ACTCCAGCTC TACTGAAGAA GCTGTGAAAG CAC

AT3G51980.1

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Computational Description: ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleotide exchange factor Fes1 (InterPro:IPR013918), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Fes1C (TAIR:AT5G02150.1); Has 632 Blast hits to 632 proteins in 203 species: Archae - 0; Bacteria - 3; Metazoa - 254; Fungi - 162; Plants - 146; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G51990.1

Model type: Protein coding
Short Description: Protein kinase superfamily protein
Computational Description: Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G28390.2); Has 110531 Blast hits to 109509 proteins in 4468 species: Archae - 125; Bacteria - 12250; Metazoa - 41494; Fungi - 9129; Plants - 31227; Viruses - 433; Other Eukaryotes - 15873 (source: NCBI BLink).
Link: InterPro Scan - TAIR