GT9147

CSHL Arabidopsis genetrap mutant lines

Original: GT9147

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT9147

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10367 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -3; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT9147 - 3-prime edge 
    TACCGGAAAC ATCGCCGCTG GAATCGGGAA ATAATTGCCA CGTCGACATT 
    TATTCAGTTC TAGGGTTTCG AATTTTTCCG ACTCGTCGTT CTCTGATTCA 
    GCCGGAGAAC TAAACCTCGC GATTCAGAAT TGCCTACCAC ACCAAGAGTC 
    GGGAGTGCGG AAATTTTATT TTTATATTTT CTGTGTGGGT TCCCCCCAAA 
    ACCATCACCA AAAATCTAAA AAGTTAAAAG ACGGCGGGAA AGTTGAAAAC 
    GATTTGGGCC GAAATTAACT TTGGGCTTGG TTTTAACGAC ATAACGTCTC 
    AAGACAAGTG AGTTAATGCC ACGGCCTTTT ATTGAGGTAA AAAAGGCACG 
    AATGCTAACC GAAAATCGTT CCAAACAACA ATTGCTTACG TGGACATTTT 
    AAAACATCTG TTCAATGGTC ATTGGTGACT GACTTCAATG AAAATTACAT 
    TGCAACAATA GCCAAGTATC ACAGAAAGTT ACATTGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10217 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT9147 - 5-prime edge 
    CCGTCTCGGA TTCTACGCCA ACCAAGCGCT CGAATCGACA GCTCCTCTAC 
    CTTCTATGGC CGATCTCTTG CTCCAAGGTG ATTCTTCGTT TCTTCCTTTT 
    TTTGTCGAAT CGTGTTTGTC ATGTGACTCA AAGGAGATTG AATTATTATT 
    TGATGCTTCA AGGATGCTCG AAGCTTATAG CACGGGAAGA AGCGATGCCT 
    GGGGAAATCC CAATGTTCAG GACTGGGCTA GGGAAGTCTG TAGTTCTTAA 
    AGAGTCTTCG ATTGCTAAAG CCAAATCCAT TTTAGCAGAG AAGGTTACTT 
    ACTCAGGTAC TTTATGTGAC AGTATTGAAT TCCCTTGACT AGTCATTTGT 
    TTCTGAATTC CCTTGAATTG TTACTTAATG TTGGTGAAAA TGGTTTCCTG 
    AAAATCTTTT GAATGTTCCA TGTTCTTGGC TACAC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR