GT9152

CSHL Arabidopsis genetrap mutant lines

Original: GT9152

Phenotypes

Morphological phenotypes

Original description

  • small plants with blanched cotyledons
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
cotyledon (PO:0020030)
  • yellow (PATO:0000324)

Original: GT9152

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26519950 [Map]; Strand: w
      • AT5G66400.2 - [+] show detail - Dehydrin family protein
        Distance: -708; Region: promoter
      • AT5G66400.1 - [+] show detail - Dehydrin family protein
        Distance: -708; Region: promoter
      • AT5G66410.1 - [+] show detail - phosducin-like protein 3 homolog
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT9152 - 3-prime edge
    TTTACCGACC GTTACCCACC GTTTTCATCC CTACCGCCAA TACATTCCCG 
    ATGCCAGATC GGGGGGGCGA CTTCACCGTA TCCGGATCCA TCTCTTTACC
    AACCAACTAA TCCAACTCAG AAAATTTTAA AATCTCAATC AAAAATCCCT
    CTAAGATAGC CAGAGAAGAG ATTGTAAACA AGGATTTGAA ATCTGGTGCA
    GAGAGGAGAA ACTCCCCGAC AATGAACACC AACGATCTAA ACGCGGCGTT
    TGGTAAAAGT TGAGTAAATT TTGTTAGGGC TTAGTTTTAG TCCATGGGCT
    AATTAGTAAG TGATTTACGG CCCACACATG AGCCCAAATG TTTCAGACCC
    AGCCAAGTTT CTTCAAATTC ACCCAATCAA CGACGATGTA CGTGTGTATG
    AAAATCATTA ACACGACGCA TCGCTTTCGA GGAGGAGCAT TACGTGTCCT
    GTTAGCTACG ATAATGTTAG TACCGCCACA AAGAAAAGGA TAGATATTTT
    GCTTTCCAGC ACCCTGTCAT GGGATTGATA TGAACACGTA CTTGGTATCG
    ACATGAAAGC TCAAAAATAA ATTCAATCCG ATTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26520057 [Map]; Strand: w
      • AT5G66400.2 - [+] show detail - Dehydrin family protein
        Distance: -815; Region: promoter
      • AT5G66400.1 - [+] show detail - Dehydrin family protein
        Distance: -815; Region: promoter
      • AT5G66410.1 - [+] show detail - phosducin-like protein 3 homolog
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT9152 - 5-prime edge
    ATAAAAGGTA ATTTAATCTT CATTGTTTAT TTCGTACTTC GAAGCTGTTC 
    TCCATAAATT CTTCTTGTAT CTCGACTTCG CGTATTTTCA AAGGGTAAAT
    AATGTGCTTG GTTTTCCACA TAATCAATCT CATGTTGTTT GGTAACCCAA
    TTAACAGAGA TAGGCTAGAT TCTATTTGTG CTGACATGAG GTCTACGTGT
    CAGGAAATTT GATAGTGTAT AGCGAATTTT AAGTGTTTTT TTGTTGGTTA
    CAATTGCAAT TAGAGTTTGA TGTTCTTGGA TCAAAAACAT TTCCGTATTT
    TTGTTGTGCA GGAAGTTCTT GCAAATGAAA AGGCACAAGG ATCAAGACCT
    GTCAACGAGG AAGTTGATCT TGACGAATTG ATGGATGTAA GTTCAATGGG
    GGCTCTCTTT GAATTGTTCT TTTATAATCT ACAATGAAAT GTTATGTTT

AT5G66400.1

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.
Computational Description
RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to water deprivation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66400.2

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.
Computational Description
RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to water deprivation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 55408 Blast hits to 21272 proteins in 1590 species: Archae - 46; Bacteria - 19188; Metazoa - 16568; Fungi - 3087; Plants - 7219; Viruses - 590; Other Eukaryotes - 8710 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66410.1

Model type
Protein coding
Short Description
phosducin-like protein 3 homolog
Curator Summary
Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.
Computational Description
phosducin-like protein 3 homolog (PLP3b); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: phosducin-like protein 3 homolog (TAIR:AT3G50960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR