GT9156

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT9156

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 13957169 [Map]; Strand: w
- AT4G28080.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: intron3 (CDS)

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAAGTG AGACTGACTT 
CTTTTTGCTG CACGTGCGTG GCACTAAACT CAAGGATTCC GTTGACATCG 
TATCGCTCAA GCCCTGCCAC CTCACTATTG TTGAAGGTAC TCTTTCTTGA 
TCTAACGGGC TACATTCTCC GGTTGAAATA ACTTCCCTAG GGTTGCCCAC 
AGAGGATTAT TTAATTTTGA ATTCGCAGAG GACTATACGG AGGAGCAAGC 
CACCGCGCAC ATACGGCGGC TCCTCGACAT CGTCGCTTGC ACCACCGCAT 
TTGGTCCGTC GAAACCCCCG GTGTCTCGTA CGCTTCCTAA GGATTCTGAA 
AAGAAGGAGT CAGGCTCGAC GGATGGAGAT TCTCCGACCG AAAAAGATGC 
CGGTGATTCA AATTCCGGTC TCAGCCCTAA ACC

5 prime edge [+] show sequence

Chromosome: 4; Position: 13957252 [Map]; Strand: w
- AT4G28080.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: intron3 (CDS)

TCACTTCTTC TTTAGGCGGT AAATTGTCAG ATAAAGCTTA CTATAACCGT 
CACTATTTGG GCCTAGGGCC CATTATTAGC AAATGTTGTA AAAATGTTTA 
CATTTTTTTA GCCATGAAGA ACAAAAGCCA CATAAATGTT GATTGAAGAA 
ACCTGGTGAG AGAGAGAGAA GTTGGTGAAG TGGCATGTCT GAACATGGAC 
CGCCAAGAGC TTCCTCACAT CTAAGATTCT GTCTGTGGAG ATACCCTATC 
ATAACATCAT CATCATCACA ATTCACAACA TCATCATCAT CAACTTGATA 
GAGAATCATA TTCATTGGCT TTTGAGTTAT AAACAATTTC TCAATCAATG 
TTTTGTTATT TAGTGTTAAG CTCATCAAAC CTTGAGTGTC ACTTGGGATT 
CATCTGGTGT TTCAACACTT ATCTCAATGA CAGTGGGCAA AACTGCACAA 
CCACACAATT TTTTTAATGT TATCAAATAA AAGAAGAGCT AAGGAAGCAA 
AAATTGAATT CTCATAATGC GTGGAGAAAC CAANATGAAT CTTAAGATAA 
GAAAATTTTG AATGGTATTG AATTAGTTTG TAATGAGAAC CTTTCTCTTC 
CTTCTTCT

AT4G28080.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01320.2); Has 11837 Blast hits to 4947 proteins in 554 species: Archae - 95; Bacteria - 3252; Metazoa - 4987; Fungi - 1783; Plants - 350; Viruses - 14; Other Eukaryotes - 1356 (source: NCBI BLink).
Link: InterPro Scan - TAIR