GT9158

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT9158

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 3515768 [Map]; Strand: c
- AT1G10640.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon6 (CDS)

TTTACCGACC GTTACCGCCC GTTTTCATCC ACTGCTGATG TTTGGTTCTT 
GCATTTGCTA TGGTCACAGT AGAATTGGTT TATCGTTATT GGAATTTGTA 
CTTGGTTGAG CTGAATGTTT GAGAAGATTA TCCCTTTCAC TGATCCTACT 
CCTCCTTGCC ATGTCTTGAT TCGGACACCT GTCATTGTGT TGTGCATAGC 
TACGTCTCGT ACTGTTATGT TCGAGACGCA GGCTTTTGTA CCCTCTTTGC 
CGAGACTACC AATGCTGATC CCGTGACCCG GTCCACAGTT CACATTGTGC 
ACAAACACGT TCGAGCAACC CGTTTGGATC GAGATACAGT CATCTCCTGC 
ATAATTCAAG GTTTCTAGAT TTAAGAATTG AGATTTTTTA AAGATTCAGG 
ATTTAAGATT GGAGATCATA TTACCGCAAG CGAGAGTAGT GCTGTGAATG 
AGGACATCTT TGGTGTTCTG GA

AT1G10640.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4327 Blast hits to 4306 proteins in 507 species: Archae - 6; Bacteria - 1323; Metazoa - 14; Fungi - 1302; Plants - 1545; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR