GT9160

CSHL Arabidopsis genetrap mutant lines

Original: GT9160

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT9160

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30129558 [Map]; Strand: c
      • AT1G80080.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G80090.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: -546; Region: promoter
    Flanking Genome Sequence: GT9160 - 3-prime edge 
    TTTACCGACC GTTACCCACC GTTTTCATCC CTAGGCGGAA GAATTCATAT 
    CGTGCCATTT CTTAGTTGTT GTTGTTGTGT GAATGCGGTT TAGGTTCGAA 
    ATTGTCAGTG TGTATATGTA TAATTCTGAA GAAACAATTG GTGGGTCCAT 
    AAAAACGTTC GCAATGTCTT TATGACTTTC ACGGGATAAC TCGAGGAGCG 
    AAATAAATAA AATTCATGAT TCTCGATTTC TGCATTTATT GCTTTCACGA 
    GATATTCCCT TCATTCGTCT TGTGTTGGGC CCTAGATCCG ACCGCTTCGT 
    GAACGGGACC CGACGTCTCC TTATCGTTTA CTTTTTTTTT ATTTGGATTG 
    AGCCCATTTT CCCATTTACG ATATGTTGGG CTATTATTCA ATTTGTATTT 
    TGAACTGGGC ACTGTATTTG TTTTTGTAAC AAACCGTAGA TAGCAATTGA 
    TAAAAAGTTT CATATGTTTG ATTCTGAACC TTAAAATCAT TATTTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30129479 [Map]; Strand: c
      • AT1G80080.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G80090.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: -625; Region: promoter
    Flanking Genome Sequence: GT9160 - 5-prime edge 
    CCTGCTTCCG CCAAAATTCA TTGTCTTGTC TATAGTTTCT CCGTTGGTCA 
    GATCTTTCAC TGTGATCACC TCCGACTCGA CGGCCCCATC TGCTCTGATC 
    GACGGCCCAC AAACTGGATT CACGATGACC AATGACGGCG CTCGCACGGA 
    GCCTGACGAG CAAGACGCCG TCTACGACAT TATGCGTGCG ACCGGCAACG 
    ACTGGGCTGC CGCGATTCCA GACGTTTGCC GAGGGAGATG GCACGGGATC 
    GAGTGTATGC CGGACCAGGA TAACGTCTAC CACGTGGTCT CTCTGTCGTT 
    CGGAGCGCTC TCAGACGACA CGGCGTTTCC GACTTGTGAT CCACAACGCT 
    CTTACGTCTC TGAGTCCCTC ACGAGGCTCA AACACCTCAA AGCCTTGTTC

AT1G80080.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Curator Summary
Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.
Computational Description
TOO MANY MOUTHS (TMM); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 29 (TAIR:AT2G42800.1); Has 88991 Blast hits to 28047 proteins in 1079 species: Archae - 16; Bacteria - 3330; Metazoa - 23111; Fungi - 805; Plants - 56845; Viruses - 0; Other Eukaryotes - 4884 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80090.1

Model type
Protein coding
Short Description
Cystathionine beta-synthase (CBS) family protein
Computational Description
Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) protein (TAIR:AT1G15330.1); Has 517 Blast hits to 517 proteins in 144 species: Archae - 0; Bacteria - 47; Metazoa - 83; Fungi - 146; Plants - 195; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR