GT9192

CSHL Arabidopsis genetrap mutant lines

Original: GT9192

Phenotypes

Morphological phenotypes

Original description

  • small plants with chlorotic leaves
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT9192

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19473741 [Map]; Strand: w
      • AT2G47450.1 - [+] show detail - chloroplast signal recognition particle component (CAO)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT9192 - 5-prime edge
    GCGAGTGGGT GAAAGTGTAC ACGTGGCGGA AGAGTGGCTA AGGACTACGA 
    GGATGGGCTG GAGTACGCTG TAGCGGAGAG TGTGATCGGG AAGAGGGTGG
    GAGACGATGG GAAGACCATC GAGTATCTTG TCAAATGGAC TGATATGTCT
    GATGCCACTT GGGAGCCTCA GGACAATGTC GACTCTACTC TTGTTCTACT
    CTACCAACAA CAACAACCAA TGAATGAATG ATTGATTTTG ATGATTACAT
    TCTTC

AT2G47450.1

Model type
Protein coding
Short Description
chloroplast signal recognition particle component (CAO)
Curator Summary
A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1.
Computational Description
CHAOS (CAO); FUNCTIONS IN: chromatin binding; INVOLVED IN: response to high light intensity, protein import into chloroplast thylakoid membrane; LOCATED IN: chloroplast thylakoid membrane, chloroplast, signal recognition particle, chloroplast targeting, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing protein 2 (TAIR:AT4G35450.5); Has 25373 Blast hits to 13489 proteins in 848 species: Archae - 87; Bacteria - 2575; Metazoa - 11620; Fungi - 2006; Plants - 1049; Viruses - 137; Other Eukaryotes - 7899 (source: NCBI BLink).
Link
InterPro Scan - TAIR