GT9268

CSHL Arabidopsis genetrap mutant lines

Original: GT9268

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT9268

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 798320 [Map]; Strand: w
      • AT3G03370.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1...
        Distance: 0; Region: intron3 (CDS)
      • AT3G03370.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT9268 - 3-prime edge 
    TAAAAAAGAC ACAGATTTTT GTGAATTTGT TATATGCTGC CAATGTTTAC 
    ATTAAACGAT TCTGTTTTCA TCGAGTAAAA AACAGAGGAT CAAAATACAA 
    CTTTTTGGAA AGTGATTTGA CAATTTACTT TGTTTAACTC TCTTGATAAC 
    ATCACTTCAT AGGGATTGCT AACAGACTGT TTTATTTTTC AATGTTACAG 
    CATCTGAATA ATCTTCCATT TCGTTTTAAA AAAAACAGAG ATTTTGATTT 
    CTTCAGTCAT CTGTTCTTGA GAGATCGCCT TGGTGGTGGT GATGAGTCTC 
    TGAAATAGCC AACCATATAC ATTTAGACAA CCTGCCATTA GAATTCCACA 
    AGGACAACCT ATGACTGCAG CTTTCCATGA AAACATTGCT TCTCTGGCTG 
    CTTGGTCTGT GT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8531552 [Map]; Strand: c
      • AT3G23690.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -540; Region: promoter
      • AT3G23700.1 - [+] show detail - Nucleic acid-binding proteins superfamily
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: GT9268 - 5-prime edge 
    CAATGTAACT TCTAGTGGAG CAGAGACTAC TGGGAGAAAT TTCTTAAAAG 
    GCAAAAATGC AAATTCATTT GTATCATCAT TATATGTCAC ACATAACACA 
    AACCTATGAA AATATATGTG TATACTCAAT GTTTTTAGTT ACACATTATA 
    AACTTCATTA ACATAAACAA CTCATAATAC ATCAAATTTA AGGGGGAAAC 
    CTTCTCAAGT CAATAATTGA CTTTTTTGAC ACCATGTTTT GGTAAGTACC 
    ATCTTTTAAA ATAGTCTCTT AACCAAGAAT AATCAAACAT GATAATTAAA 
    AACAATTTTA TCCTTTTGTT TGTTTTCTCT CCCACAACTT TCCTGTCTCT 
    GCCATGCACA TGCTCTCTCT

AT3G03370.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03370.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1).
Link
InterPro Scan - TAIR

AT3G23690.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G48560.1); Has 2369 Blast hits to 2358 proteins in 154 species: Archae - 0; Bacteria - 6; Metazoa - 35; Fungi - 85; Plants - 2234; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23700.1

Model type
Protein coding
Short Description
Nucleic acid-binding proteins superfamily
Computational Description
Nucleic acid-binding proteins superfamily; FUNCTIONS IN: RNA binding; INVOLVED IN: response to cold; LOCATED IN: chloroplast stroma, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: ribosomal protein S1 (TAIR:AT5G30510.1); Has 30347 Blast hits to 20342 proteins in 2814 species: Archae - 227; Bacteria - 22388; Metazoa - 193; Fungi - 227; Plants - 347; Viruses - 0; Other Eukaryotes - 6965 (source: NCBI BLink).
Link
InterPro Scan - TAIR