GT927

CSHL Arabidopsis genetrap mutant lines

Original: GT927

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT927

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2229992 [Map]; Strand: c
      • AT4G04470.1 - [+] show detail - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
        Distance: -712; Region: promoter
      • AT4G04480.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT927 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTCA CTGCCGCTTT 
    GATGGCCGGA ATAGCCTCGG TTAACGGTCA CGGTGTAGAT TCTGTAACCG 
    CTGTGAAGAT AGCTTCAACG GTGTTGTTAA CATCTGCGAC GGGTTTTGCT 
    GCCTTGATGA GCAAGATTCA ACCTTCGCAG CTAGCTGAAG AACAGAGGAA 
    CGCGACGAGG CTGTTCAAGA AGCTGAGAGT CGAAATCGAA ATGTTTCTGA 
    GAGAAAACGA GGAGATCGAA GAAGAAGATG TTAAGGAAGT GATAAAGAGA 
    GTGTTGTCTC TAGATAAAGC TTATCCTCTT CCTCTGATCG GAACAATGCT 
    CGAGAAGTTT CCGGAAGAGT TTAAACCGGC GACTTGGTGG CCTGAAAACA 
    AGGAGAGAAA CCCTAAAACT AGTCTTGCGA ATGGATGGAG TCAAGAGCTT 
    GAGGCGGAGA TGAGAGAAGT TGCTCATGTG GTGAAGAGCA GAGACGCAGA 
    AGAGTATGAG AAATTAGGTC ACGTGGCGTT GAA

AT4G04470.1

Model type
Protein coding
Short Description
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Curator Summary
22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer.
Computational Description
PMP22; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT4G14305.1); Has 1209 Blast hits to 1209 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 362; Plants - 267; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04480.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR