GT9270

CSHL Arabidopsis genetrap mutant lines

Original: GT9270

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT9270

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20773175 [Map]; Strand: c
      • AT3G55970.1 - [+] show detail - jasmonate-regulated gene 21
        Distance: -3851; Region: intergenic
      • AT3G55980.1 - [+] show detail - salt-inducible zinc finger 1
        Distance: -3120; Region: intergenic
    Flanking Genome Sequence: GT9270 - 3-prime edge 
    CATGTAAGTG CAAGTATTGG GTGCTCCAAT TTGACACGTG CCGTTAAATC 
    TCCGAGGAGC AAAATTGTTC AACAAATTTT GATTACATGA CGATTATCAA 
    AGGGGAAAGA CACTAAGCAT ATCGTTATCT CAATTT

AT3G55970.1

Model type
Protein coding
Short Description
jasmonate-regulated gene 21
Computational Description
jasmonate-regulated gene 21 (JRG21); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8809 Blast hits to 8750 proteins in 1005 species: Archae - 0; Bacteria - 1115; Metazoa - 109; Fungi - 1073; Plants - 4993; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55980.1

Model type
Protein coding
Short Description
salt-inducible zinc finger 1
Computational Description
salt-inducible zinc finger 1 (SZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G40140.2); Has 1623 Blast hits to 1414 proteins in 181 species: Archae - 2; Bacteria - 49; Metazoa - 777; Fungi - 32; Plants - 465; Viruses - 2; Other Eukaryotes - 296 (source: NCBI BLink).
Link
InterPro Scan - TAIR