GT9299

CSHL Arabidopsis genetrap mutant lines

Original: GT9299

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT9299

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3059494 [Map]; Strand: c
      • AT5G09830.1 - [+] show detail - BolA-like family protein
        Distance: -673; Region: promoter
      • AT5G09840.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT9299 - 3-prime edge 
    TACCTAACGG TGGTTACCAC AGTGCTGATA GATCTCTAAT CACAGATCTT 
    ATGTGTTGGG TTTCTCAGAA TCCACCACCA GCTCATCTTT TGCTAATCTC 
    TAGTGATAAG GAGTTTGCAA GTGTGTTACA TAGATTGAGG ATGAACAATT 
    ACAACATTTT GCTTGCGAGT AAATCATCAG CTCCTGGTGT TTTGTGTAGT 
    GCTGCTTCTA TTATGTGGGA TTGGGATGCT TTGATTAAAG GAGAGTGTGT 
    TACTGGTAAG CATTTTAATC AGCCTCCTGA TGGTCCTTAT AACTCTTGGT 
    ATGGTCACTA TAGGATTCCT CTTCTTGATC CATTTGCTAT TGCTACCACT 
    ACTGAGCAAT CTTCGACTAG TGTGAAAATC GAAGAACTAT CCGAGTCTGT 
    GAATTCGAAT GCTGTTGTTA ACCTTCGTCC TATTCCAAAA GAAGTTGTTG 
    ATAAGATTCG TTCGATAGTG AGTTTATATC CCAAGGGGGC TGCCATTACA 
    GAACTACGTG CGGAGCTGAG TAAGAGCAAC TTGGCTATTG ATAAAGATTT 
    CTATGGACAT AAGAAGTTTT CGAAGTTTCT TTTATCCATG CCAGATATCT 
    TACAGGTTAC TACAGTAAGT GAAGGCTTGT TTATGATTCG GGCTGTTACC 
    GAAA

AT5G09830.1

Model type
Protein coding
Short Description
BolA-like family protein
Computational Description
BolA-like family protein; CONTAINS InterPro DOMAIN/s: BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: chloroplast sulfur E (TAIR:AT4G26500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09840.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G64710.1); Has 416 Blast hits to 392 proteins in 63 species: Archae - 2; Bacteria - 5; Metazoa - 78; Fungi - 41; Plants - 277; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR