GT9334

CSHL Arabidopsis genetrap mutant lines

Original: GT9334

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT9334

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24496283 [Map]; Strand: w
      • AT5G60890.1 - [+] show detail - myb domain protein 34
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT9334 - 5-prime edge
    TTTGTCTGAC GAGTCAGACT AAAATCAATC TTACGTTGGT TTTTTCTTTA 
    ATAAGCTGTG ATAGATTCGT GTAATCGTCA CGTAGTCAAA ATAATGTGCT
    GTTGTAATAA ATTAATAATA ATAAATATTT CTACTTACAT GAATTTGTTT
    ACAAATCCGG AAAAAAACAA ACACGAAAAC TATTTTTTAC GAAAATACAT
    ATGTTTTGTT AATTTCATAT GACATGCCAC TAACGGAATT GATAAGTCTT
    ACACATTTTT AGAGTCTCAT AAGTCATAAA CTATATGAAA ATTTTAAAAT
    GACATAAACT GACCACCGTT TTCTACAAAA AAAAAAAAAA A

AT5G60890.1

Model type
Protein coding
Short Description
myb domain protein 34
Curator Summary
Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.
Computational Description
myb domain protein 34 (MYB34); FUNCTIONS IN: DNA binding, transcription activator activity, kinase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: tryptophan biosynthetic process, response to jasmonic acid stimulus, defense response to insect, cellular response to sulfur starvation, indole glucosinolate biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 122 (TAIR:AT1G74080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR