GT9357

CSHL Arabidopsis genetrap mutant lines

Original: GT9357

Phenotypes

Morphological phenotypes

Original description

  • small plants
  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT9357

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22074475 [Map]; Strand: w
      • AT1G59970.1 - [+] show detail - Matrixin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT9357 - 3-prime edge 
    TACGGCTTCG ATATCATCTT TCGCTAACTC CACTTTCCGA TCTCCACCAG 
    AAATCGCCGG AAACATAATC GCATCTTCCA CCGATGAATG ACCTAACCCT 
    AAAAGATGTC CGATCTCATG AACAGCCACC GATTCAAGAT CCACCACAGA 
    CGTCACCGGC AAAATCCGAC GGCTAATTTC ACTGTTAGAG ATCAACCAAT 
    CCTCATCACC GTCTAGATGT AACATCCCCG TAGGAGGCGA AGAAGCATGC 
    GCTAATGTTC CCATAGCTCC ATCAAACGGC TCTCCATCTC CATGTTCACC 
    GGAGAAGAAT CCGATCACTA TATCAGCACG GAGGATAGAC TCAGAGCGCG 
    TGAAATTCAA CGGAGTCACC TCCGCCCAAC GCATGAAGGC GCGTGAGAAC 
    ACGCGTTTAA CCTCGTCTGT TAAATTATTC TGCGGCACAA ACGCATAAGT 
    CAGATCTCGT TTCCGTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107794 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT9357 - 5-prime edge 
    CGGGCGGTGG CTACCTTGNT GGNATCAGTG ATGACACCAG TTATCAAGAC 
    GGCGAAGAGC AGCCCGAGGA TGCTGTGGTG CAGATCGTAC ACACATGTCC 
    TCTTCAGGTA GAAGCAGACG AACACTATGA TGGGAAGAAG CACAGCGTAC 
    ACAGGGACAG ACCAGATAGG TACGGTGTTG TCCTTGAAAG GGTACTTGAG 
    GTCAGTCATC ATGTCTTTTC CCACGTAGCG GTAGAAAGGA GAGATGAGGT 
    TCAAGCCTAT CTCGATGGCA ATCAAGATGA CGAGTATGAT CCAATCGTGC 
    TTGTGTTTAG AAGCGACTCT TCCTCCATGG GACTTTATAG TGTGAACACT 
    AAGATCTATC TCCTGCATCC TCCCTCTCTG CGCCTCCTGG TCCTGCCACC 
    AAAAACACAA ACAATCATCA CAGTCAACTA AACCTTCTTC TAATTGGATC 
    TAAACAAACA ATTCATGGCT CTCTAAGAAA TACTACTTGA GGGTTAGGGC 
    TTGACATCTC CGGTTTGGAT GAT

AT1G59970.1

Model type
Protein coding
Short Description
Matrixin family protein
Computational Description
Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT1G24140.1); Has 2665 Blast hits to 2469 proteins in 210 species: Archae - 2; Bacteria - 119; Metazoa - 2216; Fungi - 6; Plants - 186; Viruses - 42; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR