GT9359

CSHL Arabidopsis genetrap mutant lines

Original: GT9359

Phenotypes

Morphological phenotypes

Original description

  • small plants
  • short siliques (semisterile?)
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
fruit (PO:0009001)
  • decreased length (PATO:0000574)

Original: GT9359

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26434734 [Map]; Strand: w
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -956; Region: promoter
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT9359 - 3-prime edge 
    GTAGNAGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTGCTC 
    CTTTCATAAC CTAAACAANA GACCACAGAG CAATGAAATG ACAGACATTA 
    TAAGCTCCAA AAACCGTAAG AGGAAGCATC ATAGCGGAAC ATCAATAAAA 
    GTGTGAAAAT TGTGGAGTAG GATCCAGGCA AAGTTGGCGC GTACCAGAAG 
    ATACCTTGAA GCCGCTTAAA GCTTCATCGA AATCTTCGAA AGACAATCTA 
    ATCTGCGAGA CATATAAAAA GCGAAACTCG AGACCTTCAT CAAGGTGACA 
    AGCCAAAACA TAAACATATG ACAGACACTA GGCAAACAAA AAATGTAGAA 
    ACAAATGCAG ACCTTATCTA CAAGACTCGA GTCTTCTTGA GTCGCACTAG 
    CACCCGAAAG GCGAGCTCTC TTTGACGCTC TAGGATTCGT TGCGGTACCA 
    GCAGAGGACC TGGGTTTCGA CTTGGCATTA GAACGCGATG ACCTTAAGTT 
    ATACGATCTA TCGTCATCTT CATCTTCTAG GG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26434818 [Map]; Strand: w
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT9359 - 5-prime edge 
    ACCGATTTGT GGGTTGACAA ATACAGGCCT CGCACCTTGG AAGAGCTTGC 
    TGTTCACAAG AAGAAGGTTG CTTTGTTCTT TCTTTTCCTT TTAGCTCTGC 
    TTTCTCCTTG GTTCACCAAC TCATCTCCTT TCTTGTTTTT GTTATCTTTA 
    GGTTGACGAA GTCAAATTGT GGTTTCAGGA AAGTTTGGAT TTCTTAAAGG 
    TAATGTTTCG TTTATCTTTG AAATTGATTT ATGATTTCAG AGCTCGTGAT 
    GCTTAATGGC AGTATTCACT TTTTTGCCTT TCTGTTTCAG CAGAATGGTT 
    TAAGGAATAA CGTTCTACTA GTCACAGGAC AAGCTGGAGT CGGAAAATCT 
    GCTACCATCC ATTTGATTAC GTCTATCCTT GGAGTCACAG TGCATGAGTG 
    GAACGCTCCT ATTCCTACCA TCTGGCAAGA ACATGTGCAC AACACTAGTT 
    CAGGTACTTG AAGGAATTAT AGTTGTTAGT TACTCAGTTT TGGCACTGCT 
    ATTACAGACC AGAG

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR