GT936

CSHL Arabidopsis genetrap mutant lines

Original: GT936

Phenotypes

Morphological phenotypes

Original description

  • tiny, green seedlings
  • small or tiny plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seedling (PO:0008037)
  • decreased size (PATO:0000587)
  • green (PATO:0000320)

Original: GT936

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22805412 [Map]; Strand: c
      • AT3G61630.1 - [+] show detail - cytokinin response factor 6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT936 - 3-prime edge
    CGACCGTTTT CATCCCTATA CTGATCCTTT CGCTACTGAC TCGTCTAGCG 
    ACGACGACGA CNACAACAAC GTCACGGTGG TTCCAAGAGT GAAACGATAC
    GTGAAGGAGA TTAGATTCTG CCAAGGTGAA TCTTCTTCCT CCACCGCGGC
    GAGGAAAGGT AAGCACAAGG AGGAGGAAAG CGTAGTGGTT GAAGATGACG
    TGTCGACGTC GGTGAAGCCT AAAAAGTACA GAGGCGTGAG ACAGAGACCT
    TGGGGAAAAT TCGCGGCGGA GATTANAGAT CCGTCGAGCC GTACTCGGAT
    TTGGCTTGGG ACTTTTGTCA CGGCGGAGGA AGCTGCTATA GCGTACGATA
    GAGCCGCGAT TC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 167212 [Map]; Strand: c
      • AT2G01350.1 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01350.2 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01350.3 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01350.4 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01360.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
        Distance: -785; Region: promoter
    Flanking Genome Sequence: GT936 - 5-prime edge
    TTCTTTCTCT GAGAGCTGTT TATTATATTC ATCACAAAGA AGACCAACAA 
    GAAACAGAGT TGAATCAGTT CTACAATGAT CTCTGTCTCT CGATTCTTGT
    CGCCTCAATT CTACGCAATA CCAAGGTTTT ATCCGACAAA ACCCAATCTT
    TTAAGTCTCT CCTTTGTGCA TCTCTCTCGA

AT2G01350.1

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5853 Blast hits to 5853 proteins in 1914 species: Archae - 184; Bacteria - 3582; Metazoa - 59; Fungi - 129; Plants - 57; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.2

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.3

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5825 Blast hits to 5825 proteins in 1916 species: Archae - 184; Bacteria - 3588; Metazoa - 59; Fungi - 124; Plants - 57; Viruses - 0; Other Eukaryotes - 1813 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.4

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5862 Blast hits to 5862 proteins in 1918 species: Archae - 184; Bacteria - 3596; Metazoa - 59; Fungi - 124; Plants - 57; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01360.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G01390.1); Has 425 Blast hits to 414 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61630.1

Model type
Protein coding
Short Description
cytokinin response factor 6
Curator Summary
CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.
Computational Description
cytokinin response factor 6 (CRF6); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 5 (TAIR:AT2G46310.1); Has 5693 Blast hits to 5625 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5682; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR