GT9419

CSHL Arabidopsis genetrap mutant lines

Original: GT9419

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT9419

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17256694 [Map]; Strand: c
      • AT1G46624.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT9419 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAACTGAAGC 
    CCATCTTTGG AATCTTTCTC AATTCGCTGA CGAACCACTT CGGACGTATA 
    TTACTGCGTT CAAAGAAATC ATGGTTCAAA TTCCTAGCTT GTCCGACTCA 
    GCAGCTCAGT CCGCGCTCAA GAATGGCCTT TGGCACGAGT CACGTTTCCG 
    CGAGTCCTTG ACGGTAAATC GACCTGAGAC AATCCAAGAT GCACTTCATC 
    GAGCAACGAA CTGGATAAAT GCAGAAGAAG AACGAGCTTT TCTAGCTAAA 
    AAAATCAGTG CTCCAAATGC TGCACCAAAG GTATCTCAGC CCGCAACTAC 
    CAAGAAACCT GCCGAACTCC GAAAGCCCGC AGCAGGAACT TTTTCCGTTG 
    AGAAAGAGTC ACCGAAGTCT TCTCCTAAAG CTTCGCCGTC CAAACCCCCT 
    TTCTCTCCTA AGGGCAAAAA CGGTGCATTA CCGAGCAACA AATGGGTCCG 
    AGATCCGAAT GCATATTGTG ATATTCATAA GATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7952738 [Map]; Strand: w
      • AT4G13680.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT9419 - 5-prime edge 
    GAGAATAGTT TGCAACGACA AAGATGAGAG GCCATTAGAA AGATGAGGAG 
    AGGATCTCAC CAGCACAGGT TTCCGAAAGC AGAGCTTCGA GTGCTGATTG 
    AGAAGCAAAG ACATGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17256550 [Map]; Strand: c
      • AT1G46624.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT9419 - 5-prime edge 
    TATCAATCGA GCCTTCTTCC AGTTGTGTGA ACCAGGTGAG AGCAGGTCCG 
    GACAAATTTT CAGAAAACAA TTTGCAAAGC CCGGCATCTT CTTCGTGCGG 
    TTCTAGGGGG ACCCGTCCGG CGATGACTTG GAAGGAAGTC AAGTGCTCCT 
    TCGGATCTCC TTTTCCACTG TAAACGGGAA GCTTGAAATC TCGGAATTCG 
    CGGATGCGCA ACTTAGAGAT TCTTGGGGTG AAAGGTGTTC TCCTTGTTGC 
    TTCGATGACC TTATCCACTT CGGGAGCCGA AGTAGTGGCT TGATGGACTC 
    TTGCATTCAT GGCCCAGATT TGGTCTTGAA GGCTTTGGAG CTCCGAATTG 
    ACTGCGTTTG GCTCTTGTCG AGGATCGGAG ATTGGGATTC TGATGGAGGA 
    ATCAAGCGGA AACGGAGTTC GAGCTATTCC TCCATCTGAA ATTGCGGCAA 
    GTCCTGCTGG TGAAGATGAG GTGACAGGAT TCTGAGTCGA CGTCGCCCCG 
    ACTTCAACCG GTGGTGGCGG AGTCTGCTGG CCAGACGCTT CCTGGGAATT 
    TTGGACGCTC GGACTGACGG TGCCCTGGAA GTTGAGTCGC GTT

AT1G46624.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 4.3e-213 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)
Link
InterPro Scan - TAIR

AT4G13680.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT5G55270.1); Has 197 Blast hits to 193 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR