GT946

CSHL Arabidopsis genetrap mutant lines

Original: GT946

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT946

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 672857 [Map]; Strand: c
      • AT2G02500.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G02510.1 - [+] show detail - NADH dehydrogenase (ubiquinone)s
        Distance: -448; Region: promoter
    Flanking Genome Sequence: GT946 - 3-prime edge 
    TAGTTTTGAA CTAACACTTA CATTATCAAA TCCAGTCGAT GAAGAACACT 
    TGATTGACAA TAATAAAGCA TCTCTTTTGT AGCTTCTATT AACCCTTTTC 
    GAAAAATCCA GTTTTTGAAC TGAAAAATCA ACATTCAGAA ACAATCAAAA 
    ATCTCCTCAC CGAACCAGAG ATTCATTGGT TTGAACGTAT ATAAAGAGTA 
    TGAGAAATTG CCTTGAGAAC GATAGCTAAA CCCCAGATAA GAGTTCAATT 
    TGACTTTAAG CTTCGGACAC AGAAATGTCG GAGAAGTAAT GAAGCCAAGA 
    TTCGTCTGAA GCATCGCCAT GTTTTATCTC GCCTGAGAGA AGAAGAAAGC 
    TCCGGTTCCT CGGAGAACCA ATATATATAT AAGGCCAACT AAAAACAATA 
    AGCCCATCAG GCCCATTAAA AACTCAGTAA TACTAATGGG CTTTTAATAA 
    GGCCCATAAT TCAATACAGT AAAACAACAC AACAAAGCTA AAGAGAAAGA 
    AAAAAACGTA AAAATCGAAG AAGACCGGAG AAAATGGCGA AACCGTTGGG 
    AACAACCGGT GAATTTTTCC GGCGAAGGGA TGAGTGGAGG AAGCATCCGA 
    TGCTATCGAA TCAAATGAGA CACGCACTTC CAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 672833 [Map]; Strand: c
      • AT2G02500.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G02510.1 - [+] show detail - NADH dehydrogenase (ubiquinone)s
        Distance: -472; Region: promoter
    Flanking Genome Sequence: GT946 - 3-prime edge 
    ACCGTTACCG ACCGTTTTCA TCCCTAGTTT TGAACTCACA CTTACATTAT 
    CAAATACAGC CGATGAAGAA CGTTGATTGA CAATAATAAA GCATCTCTTT 
    TGTAGCTTCT ATTAACCCTT TTCGAAAAAT CCAGTTTTTG AACTGAAAAA 
    TCAACATTCA GAAACAATCA AAAATCTCCT CACCGAACCA GAGATTCATT 
    GGTTTGAACG TATATAAAGA GTATGAGAAA TTGCCTTGAG AACGATAGCT 
    AAACCCCAGA TAAGAGTTCA ATTTGACTTT AAGCTTCGGA CACAGAAATG 
    TCGGAGAAGT AATGAAGCCA AGATTCGTCT GAAGCATCGC CATGTTTTAT 
    CTCGCCTGAG AGAAGAAGAA AGCTCCGGTT CCTCGGAGAA CCAATATATA 
    TATAAGGCCA ACTAAAAACA ATAAGCCCAT CAGGCCCATT AAAAACTCAG 
    TAATACTAAT GGGCTTTTAA TAAGGCCCAT AATTCAATAC AGTAAAACAA 
    CACAACAAAG CTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 672727 [Map]; Strand: c
      • AT2G02500.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G02510.1 - [+] show detail - NADH dehydrogenase (ubiquinone)s
        Distance: -578; Region: promoter
    Flanking Genome Sequence: GT946 - 5-prime edge 
    ACTTAGTTTT GAAGCTTTAT CTTTAGTTTA AGTTTTTTTT GTTTTTCCGA 
    GCAATGCTGT GAATGTAAGT TTAAAGTTTT GAATCAACTC AAATTTTGAA 
    GCTTTTTTTT TATCTCTTAT GTTTTTCAAA GCAATGTTGT TGTGAAGGAG 
    AAGAGTGTAT CTGTGATTCT TTTATCTGGA GGTCAAGGCA AGAGAATGAA 
    AGTAAGTGTT TTTGGGATGA AAGTTTCAAA CTTTATGCTC GAGTTTTAAT 
    TGTTTGTTCT GTTGAGTTGT TTGTTTTTCT ATGTAATGTG AATAGATGAG 
    TATGCCAAAG CAGTATATAC CACTTCTTGG TCAGCCAATT GCTTTGTATA 
    GGTAACATTT CTTACTTGAA AGTCAGTTGA TTGGTTAAGT CTTGTATGTT 
    GTTTGAATCT GTTTCTGATA ACTAATTACA GTCTCGTTTG ATTGATGGAA 
    GAGTTGTAAT TTGACTGTTT TTTCATTCTG CGGAATCTAC TTGTCTATTA 
    GTATTGAACC ATCTTTGCTT TGTGTTCGTT GAATTTTATG TTTCATTGTT 
    GCAGCTTTTT CACGTTTTCA CGTATGCCTG AAGTGAAGGA AATTGTAGTT 
    GTATGTGATC CTTTTTTCAG AGACATTTTT GAAGGTTTTT TAGTCTCTCT 
    TTCTCTCATT AGTTATGTTT TT

AT2G02500.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).
Computational Description
ISPD; FUNCTIONS IN: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; INVOLVED IN: response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (InterPro:IPR001228), 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site (InterPro:IPR018294); Has 6821 Blast hits to 6815 proteins in 2244 species: Archae - 30; Bacteria - 4964; Metazoa - 52; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02510.1

Model type
Protein coding
Short Description
NADH dehydrogenase (ubiquinone)s
Computational Description
NADH dehydrogenase (ubiquinone)s; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, B12 subunit (InterPro:IPR012576); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase (ubiquinone)s (TAIR:AT1G14450.1); Has 55 Blast hits to 55 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR