GT9589

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT9589

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 1075010 [Map]; Strand: c
  - AT4G02450.1 - [+] show detail - HSP20-like chaperones superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT4G02450.2 - [+] show detail - HSP20-like chaperones superfamily protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: GT9589 - 3-prime edge
```
TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATCAA TAAGACCAAG 
TCAGTCTACA AATTCTCACC TCAACATTGA CTTTATCGGC AAGTTCCAGT 
TTGAGCTCAT AAACGTGGTT TTCTGGACCA ACTTTCGCAG AGAAATCAAA 
GACTCCTTCT GGGTCTAGGT TAACCTTGGT ATCCTTAGTA TCAGCTAATA 
CTACAGTGAG AAAAATCTTC TCGGTAGTCT CAGCCCACTT CATC
```
3 prime edge [+] show sequence
1. Chromosome: 4; Position: 1075004 [Map]; Strand: c
  - AT4G02450.1 - [+] show detail - HSP20-like chaperones superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT4G02450.2 - [+] show detail - HSP20-like chaperones superfamily protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: GT9589 - 3-prime edge
```
TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATCAATAAG 
ACCAAGTCAG TCTACAAATT CTCACCTCAA CATTGACTTT ATCGGCAAGT 
TCCAGTTTGA GCTCATAAAC GTGGTTTTCT GGACCAACTT TCGCAGAGAA 
ATCAAAGACT CCTTCTGGGT CTAGGTTAAC CTTGGTATCC TTAGTATCAG 
CTAATACTAC AGTGAGAAAA ATCTTCTCGG TAGTCTCAGC CCACTTC
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 1074918 [Map]; Strand: c
- AT4G02450.1 - [+] show detail - HSP20-like chaperones superfamily protein
  Distance: 0; Region: exon3 (CDS)
- AT4G02450.2 - [+] show detail - HSP20-like chaperones superfamily protein
  Distance: 0; Region: exon3 (CDS)

TTTGTTACCT GTTTTGTTTT AAATCTGTAA CATTTTTTTC CATTCAGGAA 
AGCAAAATCA ACATTGGGGA AAGAAGCATA TTCTGCATCA TTGAGAAAGC 
AGAGCCAGAA AGGTGGAATA AGCTACTCCG TGTGAAGAAG CCCCCACACT 
ATGTCAAGGT TGATTGGGAC AAGTGGGTTG ATGAGGACGA TGAAGGCAGT 
GCTGGTTAGC ATTCATCTTA ACGCTTATAT TATCTGTTCT TGTGTACACT 
CTCTGCACTT TATATAAAGT TCAGGATGTG TTAACTTATT TGTTTTCTAT 
GTTATGTTTA GGTGCCGCAG ATATGGATAT GGCAGGAATG GAAGGAATGG 
GAGGAATGGG AGGCATGGGC GGCATGGGAG GAATGGGTGG AATGGGTGGA 
ATGGGAGGAA TGGGTGGAAT GGGAGGAATG GAAGGAATGG ATTTCTCGGT 
TTGTTTCTAA CTTTTGATTG TCCTTCATTT TGTGCTTCAG ATATACCTAG 
CTCTGAGAAA TGACTTCTTA CTTGTTCCTT TCTTCGTGCA GAAATTAATG 
GGTGGAATGG GTGGAATGGG CG

AT4G02450.1

Model type: Protein coding
Short Description: HSP20-like chaperones superfamily protein
Computational Description: HSP20-like chaperones superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT3G03773.1); Has 51861 Blast hits to 12232 proteins in 1049 species: Archae - 75; Bacteria - 28612; Metazoa - 10233; Fungi - 1929; Plants - 4069; Viruses - 438; Other Eukaryotes - 6505 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02450.2

Model type: Protein coding
Short Description: HSP20-like chaperones superfamily protein
Computational Description: HSP20-like chaperones superfamily protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT3G03773.1); Has 981 Blast hits to 954 proteins in 256 species: Archae - 7; Bacteria - 144; Metazoa - 401; Fungi - 86; Plants - 167; Viruses - 20; Other Eukaryotes - 156 (source: NCBI BLink).
Link: InterPro Scan - TAIR