GT9700

CSHL Arabidopsis genetrap mutant lines

Original: GT9700

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT9700

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3353392 [Map]; Strand: c
      • AT1G10220.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: ZCF37 (TAIR:AT1G59590.1); Has 43 ...
        Distance: 0; Region: intron1 (CDS)
      • AT1G10220.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -851; Region: promoter
    Flanking Genome Sequence: GT9700 - 3-prime edge 
    ACCGACCGTT ACCGACCGTT TTCATCCCTA CTCGTCAGCT TTTGGTATGG 
    AACCCATAAA TTAGATATAT TAAATCCTCA TAAAATTGCT GAAATCAGAA 
    ACTAAGCCTC AGTTTAACCT ACCGATCAAC TCTAATGAAA TGATTGTAAG 
    CTCAAGTTGA TGTTTACTGG CTAAAACGGT TCTTTCTTTC AATTCAAACG 
    GTTCTTTCTT TCAATTCAAC TGTACAAGTA ACACTGCCAC GTCAACTCGA 
    AAAAATGGGA CTATGGATTG TAGTTTACAC AAAGACCAAT TTCAGTTTTA 
    TTTGCTTGTA ATGAGACTAT GGATTATAGT CTTTTTATTT TTCTTAGAGA 
    TTTGAGATGG GTTTTGAACT TTTGATGATC TCTTTATGGA AAGCGACAAA 
    TAATTAATAA CATCATGTGA AAAGCCAAAA AAAAAAGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6988931 [Map]; Strand: c
      • AT3G20020.1 - [+] show detail - protein arginine methyltransferase 6
        Distance: -832; Region: promoter
      • AT3G20020.2 - [+] show detail - protein arginine methyltransferase 6
        Distance: -832; Region: promoter
    Flanking Genome Sequence: GT9700 - 5-prime edge 
    TATCTTAACA TGATTCAGAA AATCATCTAA CTCCTTTATA GTTGGATCCA 
    CGAAATCGTC ACCTCCTCCT TCGTTATATT TTCCATTGAG ATCTGAACCT 
    CATTGAACAA AGCTTATACT TTTTCGTCAT AAACCCCAGA AACTGATGTC 
    TTGCTTCTCC ATTACATAAA GTATTTTCTT TGGATAAAGC GTTCCATCGA 
    TTGCATGTGG TTCTCACCGC TCCGAGACAA GTTATGGGAG CCCTAGAGAG 
    TATCTTCTCT ACCAAGTAAT TCGAAATATC AGAGATCGTA GTCATTGTTC 
    CGAATAGAAA GAAATGAGGG TTTTCTAACT TGCCCACTCT CTTTTATATA 
    TAGAGAGACA TACAAATTAG GTTACCCAAG TATATTTGTC ACACAAATAT 
    ACGTATATGT AGGTGTCAAA CACGGATGTG AACAAATCGC TGCTACCTTG 
    T

AT1G10220.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: ZCF37 (TAIR:AT1G59590.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10220.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20020.1

Model type
Protein coding
Short Description
protein arginine methyltransferase 6
Computational Description
protein arginine methyltransferase 6 (PRMT6); FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 1A (TAIR:AT2G19670.1); Has 5878 Blast hits to 5804 proteins in 1733 species: Archae - 156; Bacteria - 3349; Metazoa - 1214; Fungi - 260; Plants - 392; Viruses - 1; Other Eukaryotes - 506 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20020.2

Model type
Protein coding
Short Description
protein arginine methyltransferase 6
Computational Description
protein arginine methyltransferase 6 (PRMT6); FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 1A (TAIR:AT2G19670.1); Has 2687 Blast hits to 2666 proteins in 709 species: Archae - 44; Bacteria - 791; Metazoa - 996; Fungi - 246; Plants - 285; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).
Link
InterPro Scan - TAIR