GT9701

CSHL Arabidopsis genetrap mutant lines

Original: GT9701

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT9701

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17887712 [Map]; Strand: c
      • AT2G43010.1 - [+] show detail - phytochrome interacting factor 4
        Distance: 0; Region: exon3 (CDS)
      • AT2G43010.2 - [+] show detail - phytochrome interacting factor 4
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT9701 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCTCT CTGGTTGCAG 
    CTTTGGCAAA GATATCAAAG AATGGCTAGT GGAAGATGCA TCACAACCGA
    CCGTAAGAGA AAACGTATAA ATCACACTGA CGAATCTGTA TCTCTATCAG
    ATGTATGCTT CCTTTAATTC TAACTCATGA TAATAACTTC TTGAAAACGT
    AATCTTGGTC TATCTCAGAG AGTAATACAT AATACATTTT GCAGGCAATC
    GGTAACAAGT CGAACCAACG ATCAGGATCA AACCGAAGGA GTCGAGCAGC
    TGAAGTTCAT AATCTCTCCG AAAGGGTACT TCATCGGTTC GTCTATATAA
    TATATAATAT ATAGTTTAAT GTTAGAGAAT CGTATAACAT TTATACAAAG
    AAAACAGATA CAAAACTCTG TTTTTTATTT TCTTCTTTTC ATAACTCAAA
    TAGAGGAGGA GAGATAGGAT CAATGAGAGA ATGAAGGCTT TGCAAGAACT
    AATACCTCAC TGCAGTAAAG TGAGTTGATA CAAATCAAAT CTAAAAGTGA
    ATCAGATTAA GAAATGAAGA TTGATTCATT CATTGGTGTG TT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17887610 [Map]; Strand: c
      • AT2G43010.1 - [+] show detail - phytochrome interacting factor 4
        Distance: 0; Region: exon3 (CDS)
      • AT2G43010.2 - [+] show detail - phytochrome interacting factor 4
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT9701 - 5-prime edge
    AACTTGCGTT CGGATTAAGC TTTTCTTCTA TGTTTTTGCT TCGATCATGA 
    CTCATTGAGA CATCGAGATC GTTCTGTGAT GGGTTGCTTC CGCAATGGCT
    AGGTCCAACG GTCGTTACCG AGTACTGTTC CATTTCTGTT TCCCTAATCC
    CCGATGATGA ATTTGTTAAC CTAAATTTTG GAGGAGGCAT GACTTGAGGA
    GGAGGGTCAG GACAGGCCTT AGGCTTAACC ATGACTTGAG GAGGTTCAGG
    ACTGGACTTA GGCTTAACCG TCTCTGAGGT TGGTCTCTGG AGGGGATCCA
    TGGTTGAGAA GAAGTGGGAG GAGAAGTCGT CGGGTTCGAA TGGGTCTTCA
    TCTGGAGGGT ATTGGATCCA AGAGACAGTT TCTTGATCTT CAAGAAAGGT
    GCTGGATCTT AGGGCTTCTT CATGATGATC TTGTTTCTGG GTTTGGGTTT
    GTTCTCTATG AGTTTGGCTC TGCAGAACCA CTTGTCCATC TCGCCATAAT
    AACTCCACTA GTTCATCTTG TGGCCTAGAC ATCAATACAC ACACACACA

AT2G43010.1

Model type
Protein coding
Short Description
phytochrome interacting factor 4
Curator Summary
Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Computational Description
phytochrome interacting factor 4 (PIF4); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 6 (TAIR:AT3G59060.1); Has 4545 Blast hits to 4539 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 192; Plants - 3373; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G43010.2

Model type
Protein coding
Short Description
phytochrome interacting factor 4
Curator Summary
Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Computational Description
phytochrome interacting factor 4 (PIF4); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 6 (TAIR:AT3G59060.1); Has 4535 Blast hits to 4529 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 936; Fungi - 188; Plants - 3370; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR