K00103

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00103

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00103

Determination of introduced cDNA(s)

  • J013047F07 - Rice Full-length cDNAs - Original: J013047F07

    full reading [+] show sequence

    Nucleotide sequence: J013047F07 - full reading 
    GTGGGATTAC ATGTTTGATT TCCAAATTCT CTCTCTGTCT TGTCCAGGTG 
    CACGCAGACT GCGCTTCACC ATGCAGAGGG GGAGAAAGAA TGGTGCCACA 
    CCTGAAGGAG ATGTACAGCA GCCTGGCCGC GTCCAAGGAG CTCGTCAAGG 
    CTCTCTTCGG TATCTGGGGC CCCGGCGATG GCCTGAACCT GTCGACGGCG 
    TCGATGCTCT ACCTGGCACG CGCCCACGCG CGGCAGCTCG CCAAGGAGGA 
    CCGGCGGCGT GGCGACGAAA CGGTGCAGAT GAGGGCGCAG CTCGCCGAGG 
    AGGCGCGGGA GTGGAGGAGC CAGCAGAGGA AGAAGGTTGC GGCGACGGTG 
    CGCGTGGCGG TGCGGGGCTC GACGGCGAGC GGAGTTCGAG GCATCACGCC 
    GAGAGGGTGA ACGCCAAGCT CGGGAAGGCA CTGGCCGACG CGGAGAGGGA 
    GCTGGAGAGG GAGTGGAGGT CGAGGGAGCG GCTGGAGAAG GTGTGCGACG 
    AGCTCGTCAG GGGCGGCCTC ACCGGCGGCG TGGACGGCAA CAGGGGAGGC 
    AAGGAGGAGG TGGAGGAGAT GAGGCGGGAG GCCGAGAGGG CACAGGAGGA 
    GCTGGAGAAA GAGAGGGAGA TGTTGCGCCT CGCCGACGAG CTCCGCCACC 
    GAGGCCTTCC GACCCGCGGC GCTGCTCACC GTCACACCAA GGCGATGAAT 
    TGTGGCGACC AGCTTCGGCG AAGCAGCACA GGGGCGTACT CTCACCTCAG 
    TTTCTCTCTC CGTTTTCCAT GAAAATAATA AACACGAGTG TCTGATAGCT 
    AATTAACATT TTTTTTCCCG ACAGCAAATT CGCGTTTTTA CGGTATCCAC 
    AAACTAATTA CAGGTTTTTT CGATGCACTG TGACAAATTT CGCCAAACTA 
    ATTGGGTTTT GTTATTATTT TTTTTTAATA TCACTGACAA ATCTTAAGAT 
    TCTCAACTCA ATTACAGGTT TTTTGGATGC ACTGTGACAA ATTTTGCCAA 
    ACTAATTGGG TTTTGTTATT GTTTTTTTTT AATATCACTG ACAAATCTTA 
    AGATTCTCAA GTCAATTGGT GATTGGTTTG GATCGTCCAG TTGAGTGATT 
    GTATCCCAAA TCCTGTAGAA GATAGTCGGA ATAGCTATGA GTGCACGGTA 
    CAGCAATTAC TTACAGACGC AACGGTGACA GAACACAATC AATATTACTT 
    CAGAAAATAG GATACTAATC AGACTGCCGG TGCCTACGAT TTCCAACGGT 
    TTATTCTACA ATCATATGCC TGATGTAGTG CAAATGAAAA GAAAACCAAC 
    TTAAAAGTTA GTGACCTAAC CAAACAAAAC TACACTTGAA TCAACCGCGA 
    GTTGAAGTTA GAGACCAAAA GAATCATTGT CAGTGACCAC AAGAAAGTGA 
    ATTCAGACGT CAGGTAACAT GATGCTAAAG GTCACTTTTA ACAGCAGCAT 
    CATAACACTG CACCCAAATC ATATTCCAAG GCAGCTATCT TTTCTAAAAG 
    AACAAAAAGG AGTGCATAAA CACATACAAA TATAAGACCT GTTACAACTT 
    GCAAATATCC CAAGTACTTT GCTTGTTGTA GCATAAACAC AGGTAGCTGA 
    TGGGCACAGA ATACATCCGA AGGCCAAAAG GCACGGTGCC TGGGATCCAA 
    AAATTGGCTA AGGCATTCTA GTGTCAGACA AATATATACA TACACCGCCT 
    GACTGGCCTC CCCCACAATA CTACAGAGGG GCAATATGTC ACAAGAATTG 
    AGGCCCTCCT GCATTCTGCC ATATATGTAG ATACATCTAG TAGACATATA 
    GTTGGTTAAA CAGTGAGGCT CCTGATTAGT GCTAACTTGT CAGCAGCAAA 
    GCATCTTTGA GCAAGATGGC AGAGTCACAA GATTGGCCTG TTCTCCAGAC 
    TCTAAAATCT TCCTTGAAGT ATCCAGCTTT CGACCAGTGA CGCAGAATCC 
    GCAGCGGAAA TGGCCCCTGT TCGTCACCTT GAGGATCATT GTAATACCAG 
    ACACTTGCGT GCTCTGAGAT TTCTTCCTTC GCTTCGACAG CTTTCTGACC 
    ACTGCATAAT TTAGGCTTAG CTTCATGTTG TCTCGTACCA TGGTCCTCAC 
    TTCCATCAGA ATCCAGATCA ACAGTCATGT CTCCACTTTT ACCATGCAGA 
    TCATCTTCAC CGTCATCAAT GTCAATAACT TGACCTGGGT TGACAGCTGC 
    AGTAGCTACA ATAATAGTAT GAACAAGTAG AAAAACTTGG AGAAACC

    Gene models with high sequence identity

    1. AT5G08430.1 [+] show detail - SWIB/MDM2 domain;Plus-3;GYF
      E-value: 3e-12; Score: 71.20

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam GYF 2.2e-14
    HMMPanther gb def: ENSANGP00000013325 (Fragment) 5.8e-07
    HMMPanther GRB10 INTERACTING GYF PROTEIN 5.8e-07
    ProfileScan GYF 13.998
    HMMSmart GYF 2.7e-09
    superfamily GYF 1.6e-11

    See the detailed result >

    AT5G08430.1

    Model type
    Protein coding
    Short Description
    SWIB/MDM2 domain;Plus-3;GYF
    Computational Description
    SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR