K00103

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00103

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00103

Determination of introduced cDNA(s)

  • J013047F07 - Rice Full-length cDNAs - Original: J013047F07

    full reading [+] show sequence

    Nucleotide sequence: J013047F07 - full reading
    GTGGGATTAC ATGTTTGATT TCCAAATTCT CTCTCTGTCT TGTCCAGGTG 
    CACGCAGACT GCGCTTCACC ATGCAGAGGG GGAGAAAGAA TGGTGCCACA
    CCTGAAGGAG ATGTACAGCA GCCTGGCCGC GTCCAAGGAG CTCGTCAAGG
    CTCTCTTCGG TATCTGGGGC CCCGGCGATG GCCTGAACCT GTCGACGGCG
    TCGATGCTCT ACCTGGCACG CGCCCACGCG CGGCAGCTCG CCAAGGAGGA
    CCGGCGGCGT GGCGACGAAA CGGTGCAGAT GAGGGCGCAG CTCGCCGAGG
    AGGCGCGGGA GTGGAGGAGC CAGCAGAGGA AGAAGGTTGC GGCGACGGTG
    CGCGTGGCGG TGCGGGGCTC GACGGCGAGC GGAGTTCGAG GCATCACGCC
    GAGAGGGTGA ACGCCAAGCT CGGGAAGGCA CTGGCCGACG CGGAGAGGGA
    GCTGGAGAGG GAGTGGAGGT CGAGGGAGCG GCTGGAGAAG GTGTGCGACG
    AGCTCGTCAG GGGCGGCCTC ACCGGCGGCG TGGACGGCAA CAGGGGAGGC
    AAGGAGGAGG TGGAGGAGAT GAGGCGGGAG GCCGAGAGGG CACAGGAGGA
    GCTGGAGAAA GAGAGGGAGA TGTTGCGCCT CGCCGACGAG CTCCGCCACC
    GAGGCCTTCC GACCCGCGGC GCTGCTCACC GTCACACCAA GGCGATGAAT
    TGTGGCGACC AGCTTCGGCG AAGCAGCACA GGGGCGTACT CTCACCTCAG
    TTTCTCTCTC CGTTTTCCAT GAAAATAATA AACACGAGTG TCTGATAGCT
    AATTAACATT TTTTTTCCCG ACAGCAAATT CGCGTTTTTA CGGTATCCAC
    AAACTAATTA CAGGTTTTTT CGATGCACTG TGACAAATTT CGCCAAACTA
    ATTGGGTTTT GTTATTATTT TTTTTTAATA TCACTGACAA ATCTTAAGAT
    TCTCAACTCA ATTACAGGTT TTTTGGATGC ACTGTGACAA ATTTTGCCAA
    ACTAATTGGG TTTTGTTATT GTTTTTTTTT AATATCACTG ACAAATCTTA
    AGATTCTCAA GTCAATTGGT GATTGGTTTG GATCGTCCAG TTGAGTGATT
    GTATCCCAAA TCCTGTAGAA GATAGTCGGA ATAGCTATGA GTGCACGGTA
    CAGCAATTAC TTACAGACGC AACGGTGACA GAACACAATC AATATTACTT
    CAGAAAATAG GATACTAATC AGACTGCCGG TGCCTACGAT TTCCAACGGT
    TTATTCTACA ATCATATGCC TGATGTAGTG CAAATGAAAA GAAAACCAAC
    TTAAAAGTTA GTGACCTAAC CAAACAAAAC TACACTTGAA TCAACCGCGA
    GTTGAAGTTA GAGACCAAAA GAATCATTGT CAGTGACCAC AAGAAAGTGA
    ATTCAGACGT CAGGTAACAT GATGCTAAAG GTCACTTTTA ACAGCAGCAT
    CATAACACTG CACCCAAATC ATATTCCAAG GCAGCTATCT TTTCTAAAAG
    AACAAAAAGG AGTGCATAAA CACATACAAA TATAAGACCT GTTACAACTT
    GCAAATATCC CAAGTACTTT GCTTGTTGTA GCATAAACAC AGGTAGCTGA
    TGGGCACAGA ATACATCCGA AGGCCAAAAG GCACGGTGCC TGGGATCCAA
    AAATTGGCTA AGGCATTCTA GTGTCAGACA AATATATACA TACACCGCCT
    GACTGGCCTC CCCCACAATA CTACAGAGGG GCAATATGTC ACAAGAATTG
    AGGCCCTCCT GCATTCTGCC ATATATGTAG ATACATCTAG TAGACATATA
    GTTGGTTAAA CAGTGAGGCT CCTGATTAGT GCTAACTTGT CAGCAGCAAA
    GCATCTTTGA GCAAGATGGC AGAGTCACAA GATTGGCCTG TTCTCCAGAC
    TCTAAAATCT TCCTTGAAGT ATCCAGCTTT CGACCAGTGA CGCAGAATCC
    GCAGCGGAAA TGGCCCCTGT TCGTCACCTT GAGGATCATT GTAATACCAG
    ACACTTGCGT GCTCTGAGAT TTCTTCCTTC GCTTCGACAG CTTTCTGACC
    ACTGCATAAT TTAGGCTTAG CTTCATGTTG TCTCGTACCA TGGTCCTCAC
    TTCCATCAGA ATCCAGATCA ACAGTCATGT CTCCACTTTT ACCATGCAGA
    TCATCTTCAC CGTCATCAAT GTCAATAACT TGACCTGGGT TGACAGCTGC
    AGTAGCTACA ATAATAGTAT GAACAAGTAG AAAAACTTGG AGAAACC

    Gene models with high sequence identity

    1. AT5G08430.1 [+] show detail - SWIB/MDM2 domain;Plus-3;GYF
      E-value: 0.000000000003; Score: 71.20

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam GYF 0.000000000000022
    HMMPanther gb def: ENSANGP00000013325 (Fragment) 0.00000058
    HMMPanther GRB10 INTERACTING GYF PROTEIN 0.00000058
    ProfileScan GYF 13.998
    HMMSmart GYF 0.0000000027
    superfamily GYF 0.000000000016

    See the detailed result >

    AT5G08430.1

    Model type
    Protein coding
    Short Description
    SWIB/MDM2 domain;Plus-3;GYF
    Computational Description
    SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR