K00205

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00205

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00205

Determination of introduced cDNA(s)

  • J013045D16 - Rice Full-length cDNAs - Original: J013045D16

    full reading [+] show sequence

    Nucleotide sequence: J013045D16 - full reading
    GTTCTGGTCT CCACCCTCCC TTTCTCTCTC TAGTCCTCTA GAGCCGAGGG 
    TTGCTGCGAG GAAAGCGTAG GAGAGAGGGT TGCTGGCTGC AGCCCCGGCG
    AGAAGCGCCA TTGTTGTCGT CGTTGGGCCA AGAACCAAGA AACCAAGAAG
    ACAAGAGGAG GAGGAGGGGG GAAGAAGACG GAAGAGAGAG AGGAAGAGGC
    ACTGGATAGG TGCATCCTTT GCCTCTAGCC GCTTTCTCTT TCTCCTTCCT
    GGAGGGGGGA GAGAGAGAGA GGAGTGGGAG AGGAAAGGAG AGTAGATGGG
    CGAGATGGTC TTGGCCGGGT ATGGCATGGA CAAGGCGGTG AGGAGCAGCG
    TCAGCTTCGG GACGCCGTGC GGCAGGCTGC TGCGCGAGCT CGAGCAAATA
    TGGACTGAGA TTGGGGGGTT GAGATTGATG GAGAAGAAGA AGGTGGCGGT
    GCCGCTGGTG TGCCACGGCC ACTCGCGCCC GGTCGTCGAC CTGTTCTACA
    GCCCCGTCAC GCCCGACGGG TACTTCCTCA TCAGCGCCAG TAAGGATGGG
    AATCCAATGC TTCGTAATGG TGAGACTGGA GATTGGATTG GGACTTTCCA
    AGGTCATAAA GGGGCTGTCT GGAGCTGCTG CCTAGACACA AATGCTCTGC
    GTGCTGCATC TGGTTCTGCT GACTTTTCAG CCAAAGTTTG GGATGCACTA
    ACAGGTGATG AGCTACATTC ATTTGAACAC AAGCACATTG TCCGTGCATG
    CGCGTTTTCT GAGGATACCC ACCTGTTGCT CACTGGAGGC GTAGAAAAGA
    TTTTGCGTGT CTATGATATG AATCGTCCAG ATGCAGCACC AAGAGAACTT
    GACAAAGCAC CTGGTAACGT GCGAACTGTT GCTTGGCTTC ATAGTGATCA
    AACAATACTA AGCTCGTGCT CTGATATGGG AGGAGTAAGA TTGTGGGATG
    TGAGGACTGG AAAAATTGTC CAAACTCTTG AAACCAAGGC GCCTGTGACT
    AGCGCAGAAG TAAGTCAAGA CAGCAGGTTC ATCACTACAG CTGATGGCTC
    GAGTGTTAAA TTTTGGGATG CTAATCACTT TGGGCTTGTT AAAAGCTATG
    ATATGCCTTG CACTGTGGAG TCAGCTTCCC TGGAACCAAA ATCTGGGAGC
    AAATTTATTG TTGGGGGAGA AGATATGTGG GTTCATGTAT TTGATTTCTT
    CACTGGTGAA GAAATAACCT GTAACAAGGG GCATCATGGT CCTGTCCACT
    GTGTCCGCTT TGCACCTGGC GGTGAATCTT ATGCATCAGG ATCAGAAGAT
    GGCACCATCC GGATCTGGCA GCTGAGCCCA CCTAACGCTG ATGACAATGA
    GGCGGTCAAT TCAAATGGCA AACCAACAGT TGGGGTAAAT GAGGTTGCAC
    GCAAGATCGA AGGCTTCCAC ATTCCCAAGG AGGAGGAGCA GCAGCAGCAG
    CAGGCTGAGG GGTAGGACTA CAAGGTTGGC AAACATGGCA GTGCTTGGTG
    CTTACTGGGA GATGATTGCT TGTCGATGCT CCTCTCCTTC CCGTTTCTCC
    CTTGCTTTGT TGATGCCCTT GGTTCCCGAC GCAAGGGGGG AGAGATCTTG
    TCCTCCGTGA CCAAAACGGT GGATTTCTGT ATGGGGCCCT CACCAAATAG
    ACAGTGTCAG GGTAGTATCT ATCTACAGTG CCAAAATAAA CCAAGAGGAA
    AGCAAGTTGG TAGTTTAGTA TCGTTGATTG CATTCACAGA AGTGAAAGTC
    TTGTATTCCG CTGGTGGCGG TGATACAGCA GATGCCATTG TGTTCACCGG
    TTTTTGCCTC CCCTACCCTT CTATGGACTC TTTTCTTATC

    Gene models with high sequence identity

    1. AT3G15610.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 8e-164; Score: 574.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P 1.2e-172
    HMMPanther WD40 REPEAT PROTEIN 1.2e-172
    Gene3D WD40/YVTN repeat-like-containing domain 8.7e-62
    ProfileScan WD40 repeat 2 11.277
    ProfileScan WD40 repeat 2 8.503
    ProfileScan WD40 repeat 2 14.519
    ProfileScan WD40-repeat-containing domain 29.794
    HMMSmart WD40 repeat 13
    HMMSmart WD40 repeat 2.6e-06
    HMMSmart WD40 repeat 2.3e-05
    HMMSmart WD40 repeat 1.6
    HMMSmart WD40 repeat 0.0044
    HMMSmart WD40 repeat 44
    HMMSmart WD40 repeat 1.5e-08
    superfamily WD40 repeat-like-containing domain 7.9e-66
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 0.077
    HMMPfam WD40 repeat, subgroup 3.3e-06
    HMMPfam WD40 repeat, subgroup 0.00074
    HMMPfam WD40 repeat, subgroup 0.079
    HMMPfam WD40 repeat, subgroup 0.27
    HMMPfam WD40 repeat, subgroup 5.9e-10

    See the detailed result >

    AT3G15610.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G52730.1); Has 43706 Blast hits to 23089 proteins in 800 species: Archae - 76; Bacteria - 7357; Metazoa - 15603; Fungi - 10314; Plants - 4879; Viruses - 0; Other Eukaryotes - 5477 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR