K00206

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00206

Determination of introduced cDNA(s)

J013130E06 - Rice Full-length cDNAs - Original: J013130E06

full reading [+] show sequence

GGGGACACTG TTCGAATTGC TTGGGAACTC TTCCATGGAA TCTGGATGGA 
TACCTTATTG AGTAGTAAAT TTCTTAATAC AGCTCGCTAT CCAGATAGTG 
CTAGCTGTGA TTGTTTGGTG ATCAATCTAT TGGGATTGTG CCGACTGGAG 
CTGTTCGACA TTGCTTTGGT CTTTTGTTGA TTTGCCTGGA GTTCGGCAGT 
ATACAGCAAC CCTGGAGTGC ATGCAGTGGT TTCCTCATTT TTTAGGACCT 
GACTGCATTC TGTAGTGAGA ACTATCCTGC TAAATGCATA ATACTTGCAG 
GTGTTTTCTG TTGTATTGGC AACGTGATAG TTTTTGTGGT GCAAAACATT 
CAAGATGGGC GCCATGGACG TACAACTTGA GTCTACTGCT GTTCAACGTG 
GACAAGCTAA GATAAATGTG GAGGAACATG CTCTAGTTTC TCTGTTGTCT 
GATGAGAAGT ACGCAACTGA AAAGACCGAA GATGTGGACC CTGATGATTA 
TGAGAAACTT GAGGAAGGGA TAATGCAGTA TGGGTGTGCA CATTATCGAA 
GAAGGTGCCG CATTCGAGCT CCATGTTGCA ACGAGATTTT TGATTGTCGG 
CATTGCCACA ATGAAACAAA GAATTCAATT AAAATTGATG CTGTGAAGAG 
GCATGAACTC CCACGCCATG AAGTGCAGCA GGTTATATGC TCGTTGTGTG 
GCACGGAACA AGAGGTACGG CAAGTATGTA TCAGTTGTGG TGTATGCATG 
GGGAAGTACT TCTGTGAAGT GTGCAAGCTC TTTGATGATG ATGTTTCAAA 
ACAGCAATAT CATTGCAATG GTTGTGGAAT ATGCAGAATT GGTGGCAAGG 
AGAATTTCTT TCACTGCTCA AAATGCGGAT GCTGTTATTC TATAGTATTG 
AAGAACAGTC ATGCATGTGT TGAAGGAGCG ATGCATCATG ACTGTCCAAT 
CTGCTTTGAG TACCTTTTTG AATCAACCAA TGATGTTTCC GTCTTGCCCT 
GTGGTCATAC CATTCATGTC AAGTGCTTGC GAGAAATGGA GGAGCACTGC 
CAATTTGCTT GCCCGCTTTG CTCTAAATCT GTCTGCGACA TGTCGAAGGC 
ATGGGAGAGA TTGGACGAGG AACTAGCAAC GATATCTGAC ACCTGTGACA 
ATAAAATGGT GCGCATATTG TGCAACGATT GTGGGGCAAC ATCAGAGGTG 
CAGTTCCATT TGATTGCGCA CAAGTGCCAG AAGTGCAAGT CCTACAACAC 
CCGCCAGATC TGAAGTGGCG AAGTTTTGAT GTGATTCATT TTGTATGGGA 
AGAGAGCCCT GGGGGATGCT CATTTTGCAA CACAAATCCC GCTAACGCCT 
CTGGGAATCT GATGAGCTCT CGGTCGTTTT CTTGCTCATT GGATGCCTCA 
GCCGAGGCAA ATCACTCGCA TCTGAAATTC ATCTATGAAG TGGATGCTGT 
TCCCTCCTGT GTTCAATTTA TTACCTCACC ATGTCGCAGA CTCAGAGTCC 
TGTTCAGCTT AAGTTTCTAC TAGCACTAGC CGAGATAATA AGTGCACGTC 
TACTCAAGCT TCTGGGCATA AATGGTGGCT AGCTTGTGTG TTATGGTGTG 
TACTTGTTGA GTCTCGGGCA AACACTGTAA CGGTTAGTGG CATAGTATTA 
CTTCTTGCTC GTGTGCGTGT GTAGTAGGAT GGCGGATTGC AGGACGTGGG 
TGTTATTTAC TGGTAGGAAC TGTGGTACTT GCAGTAGCCA CCATTTCTCA 
TGTTCAATGC CGGTCCCATA TGCCGGTCTT GTTCAGTTCC TATACCTTGC 
TCGGTTGAGA AAAATGGCAA ATCTACCTCA GTTCATTTTG TTC

Gene models with high sequence identity

AT5G25560.1 [+] show detail - CHY-type/CTCHY-type/RING-type Zinc finger protein
E-value: 5e-123; Score: 438.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Zinc finger, RING-type	11.943
ProfileScan	Zinc finger, CHY-type	26.125
ProfileScan	Zinc finger, CTCHY-type	34.79
HMMSmart	Zinc finger, RING-type	3.3e-06
HMMPanther	RING FINGER AND CHY ZINC FINGER DOMAIN CONTAI	4.8e-114
HMMPfam	Zinc finger, CHY-type	1.4e-16
HMMPfam	Zinc finger, C3HC4 RING-type	1.6e-05
superfamily	RING/U-box	9.5e-14

See the detailed result >

AT5G25560.1

Model type: Protein coding
Short Description: CHY-type/CTCHY-type/RING-type Zinc finger protein
Computational Description: CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR