K00212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00212

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • increased length (PATO:0000573)
    (Stem::Shape::long internode)
T2 rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00212

Determination of introduced cDNA(s)

  • J033024H02 - Rice Full-length cDNAs - Original: J033024H02

    full reading [+] show sequence

    Nucleotide sequence: J033024H02 - full reading
    GGCCGGTGTT TGTTATCCAC ATTTGCGGGG CGCAGCAGCA AAAGCACAAG 
    GGCAAAGCCT CGCCGCCGTC GCCGCCGCCG CCGCCGCCGC CGCCGCGGCG
    ATCGCCACGC CATGTCTCCC TCCCTCTTGC TTACCTCTAG GGGTACCCAC
    TCGCCGGCGC CACGGCCGCA AACCCGTCGA GCATCACAAC TGCTCGTCTC
    TTTCCCCTCG CGCTGCAGCC GCTTCGTCGG CCTCCGCCTC GCGCGCGCAG
    CCGCCGATTC GCAGGGGCCC AACGGCGCTG CCCCTGGATC TGGATCTGGT
    GGGGACGGAG AGGGCAAGGC AGCCAATGGT GCCGACACCA AATTGCCAAA
    GAACCGGAGG GACATACTCC TGGAATACGT TAAAAATGTC CAGCCAGAGT
    TTATGGAGCT CTTCATAAAA AGAGCTCCGC CACAGGTTGT TGATGCCATG
    CGCCAAACGG TGACTAATAT GATTGGGACT CTGCCACCTC AATTTTTCGC
    TGTAACTGTG ACAACGGTTG CTGAAAATCT AGCTCAGCTT ATGTACAGTG
    TTCTGATGAC CGGATACATG TTCAGGAATG CGCAGTATCG TCTGGAATTG
    CAACAGAGTT TGGAGCAGAT TGCCCTTCCA GAACCAAAAG AAGAAAATGA
    TTCTGCAGAT TATGCTCCTG GAACCCAGAA AAAGGTTACT GGAGAAGTTA
    TCCGATGGAA CAAGACTACT GGTCCTGAGA AAATTGATGC AGTAAAATAT
    ATAGAATTGC TTGAAGCAGA AATTGATGAG CTCAGCCATC AAGTTGCTAG
    AAAATCATCT CAAGGAAGTA ATGAACTCTT GGAATATCTA AAAACTCTAG
    AACCTCAAAA TCTGAAGGAG CTGGCAAGTA GTGCCGGCGA GGATGTCGTT
    TTTGCTATGA ATGCATTCAT AAAGCGCCTT TTGGCTGTCT CAGATCCTGC
    ACAGATGAAG ACAACAGTTT CAGAAACAAG TGCTAATCAG CTAGCCAACT
    TGATGTTTTG GTTGATGATT GTTGGCTACA GCATGCGCAA TATTGAAGTG
    CGGTTTGACA TGGAAAGAGT ATTGGGTGCT GCCCCAAAGA TAGGGGAATT
    ACCACCTGGA GAAAACATAT AGCAGGGAGG AAAGGGGCGT AAGAGTGGGG
    AAGTGATGAT TAGTTAAAAT CTAGGGTTAC TGGCCGGCCA AGATAACTGT
    ATTTGCGTGG TCATATTATT TTGAGTGGAA TGGATTACAG CATTTGTGCA
    AAGACACCAA TCCACATTTT GGGAACTAAG ATGAGATGCT AGGCATAGCC
    ATTTCTGATA TATTTCTCGG GGAGGTATAG ACGACGAGAT ACATAGAAAC
    AATAGAACGG GACCTGATGC TGTAGTTTTG CAACCTGACT ATTGTTGGTA
    AAATACAATC AAGGCAACTC ATATTACC

    Gene models with high sequence identity

    1. AT1G63610.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 5e-114; Score: 408.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G63610.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast hits to 411 proteins in 100 species: Archae - 0; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033037F14 - Rice Full-length cDNAs - Original: J033037F14

    full reading [+] show sequence

    Nucleotide sequence: J033037F14 - full reading
    GAGTGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
    CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC
    CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC
    CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT
    CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG
    CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC
    GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT
    CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC
    CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GGACGAGAAG
    GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC
    CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA
    ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG
    CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT
    CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT
    TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG
    GTCGGTTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG
    CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT
    CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC
    ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT
    GTGCCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGC

    Gene models with high sequence identity

    1. AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
      E-value: 6e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PEROXIREDOXIN 6 RELATED 8.4e-128
    HMMPanther PEROXIREDOXIN 8.4e-128
    superfamily Thioredoxin-like fold 1.6e-63
    ProfileScan Thioredoxin-like 17.386
    HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 5.9e-32
    HMMPfam Peroxiredoxin, C-terminal 1.1e-14
    Gene3D Thioredoxin fold 9.2e-55

    See the detailed result >

    AT1G48130.1

    Model type
    Protein coding
    Short Description
    1-cysteine peroxiredoxin 1
    Curator Summary
    encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
    Computational Description
    1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR