K00212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem internode (PO:0020142)	increased length (PATO:0000573) (Stem::Shape::long internode)
T2	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00212

Determination of introduced cDNA(s)

J033024H02 - Rice Full-length cDNAs - Original: J033024H02

full reading [+] show sequence

GGCCGGTGTT TGTTATCCAC ATTTGCGGGG CGCAGCAGCA AAAGCACAAG 
GGCAAAGCCT CGCCGCCGTC GCCGCCGCCG CCGCCGCCGC CGCCGCGGCG 
ATCGCCACGC CATGTCTCCC TCCCTCTTGC TTACCTCTAG GGGTACCCAC 
TCGCCGGCGC CACGGCCGCA AACCCGTCGA GCATCACAAC TGCTCGTCTC 
TTTCCCCTCG CGCTGCAGCC GCTTCGTCGG CCTCCGCCTC GCGCGCGCAG 
CCGCCGATTC GCAGGGGCCC AACGGCGCTG CCCCTGGATC TGGATCTGGT 
GGGGACGGAG AGGGCAAGGC AGCCAATGGT GCCGACACCA AATTGCCAAA 
GAACCGGAGG GACATACTCC TGGAATACGT TAAAAATGTC CAGCCAGAGT 
TTATGGAGCT CTTCATAAAA AGAGCTCCGC CACAGGTTGT TGATGCCATG 
CGCCAAACGG TGACTAATAT GATTGGGACT CTGCCACCTC AATTTTTCGC 
TGTAACTGTG ACAACGGTTG CTGAAAATCT AGCTCAGCTT ATGTACAGTG 
TTCTGATGAC CGGATACATG TTCAGGAATG CGCAGTATCG TCTGGAATTG 
CAACAGAGTT TGGAGCAGAT TGCCCTTCCA GAACCAAAAG AAGAAAATGA 
TTCTGCAGAT TATGCTCCTG GAACCCAGAA AAAGGTTACT GGAGAAGTTA 
TCCGATGGAA CAAGACTACT GGTCCTGAGA AAATTGATGC AGTAAAATAT 
ATAGAATTGC TTGAAGCAGA AATTGATGAG CTCAGCCATC AAGTTGCTAG 
AAAATCATCT CAAGGAAGTA ATGAACTCTT GGAATATCTA AAAACTCTAG 
AACCTCAAAA TCTGAAGGAG CTGGCAAGTA GTGCCGGCGA GGATGTCGTT 
TTTGCTATGA ATGCATTCAT AAAGCGCCTT TTGGCTGTCT CAGATCCTGC 
ACAGATGAAG ACAACAGTTT CAGAAACAAG TGCTAATCAG CTAGCCAACT 
TGATGTTTTG GTTGATGATT GTTGGCTACA GCATGCGCAA TATTGAAGTG 
CGGTTTGACA TGGAAAGAGT ATTGGGTGCT GCCCCAAAGA TAGGGGAATT 
ACCACCTGGA GAAAACATAT AGCAGGGAGG AAAGGGGCGT AAGAGTGGGG 
AAGTGATGAT TAGTTAAAAT CTAGGGTTAC TGGCCGGCCA AGATAACTGT 
ATTTGCGTGG TCATATTATT TTGAGTGGAA TGGATTACAG CATTTGTGCA 
AAGACACCAA TCCACATTTT GGGAACTAAG ATGAGATGCT AGGCATAGCC 
ATTTCTGATA TATTTCTCGG GGAGGTATAG ACGACGAGAT ACATAGAAAC 
AATAGAACGG GACCTGATGC TGTAGTTTTG CAACCTGACT ATTGTTGGTA 
AAATACAATC AAGGCAACTC ATATTACC

Gene models with high sequence identity

AT1G63610.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
E-value: 5e-114; Score: 408.00

InterPro Scan Digest

See the detailed result >

AT1G63610.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast hits to 411 proteins in 100 species: Archae - 0; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033037F14 - Rice Full-length cDNAs - Original: J033037F14

full reading [+] show sequence

GAGTGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC 
CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC 
CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT 
CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG 
CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC 
GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT 
CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC 
CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GGACGAGAAG 
GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC 
CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA 
ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG 
CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT 
CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT 
TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG 
GTCGGTTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG 
CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT 
CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC 
ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT 
GTGCCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGC

Gene models with high sequence identity

AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
E-value: 6e-88; Score: 321.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PEROXIREDOXIN 6 RELATED	8.4e-128
HMMPanther	PEROXIREDOXIN	8.4e-128
superfamily	Thioredoxin-like fold	1.6e-63
ProfileScan	Thioredoxin-like	17.386
HMMPfam	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	5.9e-32
HMMPfam	Peroxiredoxin, C-terminal	1.1e-14
Gene3D	Thioredoxin fold	9.2e-55

See the detailed result >

AT1G48130.1

Model type: Protein coding
Short Description: 1-cysteine peroxiredoxin 1
Curator Summary: encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
Computational Description: 1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
Link: InterPro Scan - TAIR