K00213

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00213

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00213

Determination of introduced cDNA(s)

  • J013169L09 - Rice Full-length cDNAs - Original: J013169L09

    full reading [+] show sequence

    Nucleotide sequence: J013169L09 - full reading 
    GGTTGCCTCT TTCCCAGTTT GTGCTCTCTC CTCTCCTCAC TCCGCCTTAT 
    CCCCAAAACC CTATCGATCC CATCCCCTTT CCTCCTCACC CATGGCGGCC 
    ACGCTCTTCT CCACCGCCCT CTCCCCGCAC CTCCTCCCCC TCCCCTCCAC 
    CTCCTCCAAC CCCGCCTCAT CCTCCCTCTC CTTCCTCTCC AAGCCGCTGC 
    TCCCCGCCCT CGCCGTCGCG GGATGGCCGC GGAGGAGGAC CAGCCCCTTC 
    GTGCCGGTGG CCGTGGCCGT GTCGGAGGAG GTCGAGACGG AGGAGGACGA 
    GGAGGAGGAG GAGGAGGGCT CCGGGGGCGA GGAGTTCTCC GACGACCTGA 
    GGGTCTTCGT CGGCAACCTG CCCTTCAGCG TCGACAGCGC CCAGCTCGCC 
    GGCCTCTTCG AGCAGGCCGG CTCCGTCGAG ATGGTCGAGG TCATCTATGA 
    TAAGCTGACT GGAAGGAGTC GTGGGTTTGG GTTTGTGACA ATGTCTAGTG 
    TTGAAGAAGT TGAGGCAGCT GTCGAGCAAT TCAATGGCTA TATACTTGAT 
    GGGAGATCTT TGAGGGTTAA CTCAGGGCCA CCACCACCAA GGGAGCAATC 
    ATCGCAGAGA GCACCCAGGG GTGAGGCCAA CAGGGTCTAT GTAGGTAACC 
    TTTCTTGGGG TGTTGACAAT GCAGCTCTCG CAAACCTATT CAGTGGGGAA 
    GGGGAGGTCT TGGAAGCCAA GGTCATCTAT GACAGGGAGA GTGGCAGGTC 
    AAGGGGATTT GGTTTTGTCA CGTATGGTTC CGCTGAAGAG GTTGAGAATG 
    CAGTTTCAAA TCTTGATGGC GCTGACATGG ATGGCAGACA GATCCGAGTT 
    ACAGTAGCAG AATCGAAACC ACCTAGGAGA CAATATTGAA ATTCGTTTAG 
    ATGCCCTGAA GCCTATGGTT AGTCCAGATA TGAATCATAC TATCGTCATG 
    ATTGTTCTAT AGCATCGATG GAATTCTAGT CGTAACTTCC ACCATATGGT 
    TCAAAAGATT GGTTTGGTGA TGAGATATAT ATCATTTTGT TTTAACTTTT 
    TGAACCCACT TTTTTTTGTT ATGTATGGCT TGTTCCTTGA ATTATAGAGT 
    AAAGTGCACG GCCGGTCTCT AAACTTGTGC TATTCAGGTC TCATAATTTG 
    ACAAAGTGTG TCATTCCGGT CC

    Gene models with high sequence identity

    1. AT2G37220.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-68; Score: 256.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA recognition motif, RNP-1 1.8e-20
    HMMPfam RNA recognition motif, RNP-1 2.2e-19
    superfamily RNA-binding domain, RBD 3.5e-26
    superfamily RNA-binding domain, RBD 2.7e-25
    HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 2.8e-78
    HMMPanther RNA-BINDING PROTEIN 2.8e-78
    ProfileScan RNA recognition motif, RNP-1 19.041
    ProfileScan RNA recognition motif, RNP-1 19.707
    HMMSmart RNA recognition motif, RNP-1 8.8e-28
    HMMSmart RNA recognition motif, RNP-1 7.3e-26
    Gene3D Nucleotide-binding, alpha-beta plait 1.9e-28
    Gene3D Nucleotide-binding, alpha-beta plait 1.4e-25

    See the detailed result >

    AT2G37220.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Curator Summary
    Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 (TAIR:AT3G53460.3); Has 997478 Blast hits to 497195 proteins in 22066 species: Archae - 21542; Bacteria - 603238; Metazoa - 188798; Fungi - 28200; Plants - 60491; Viruses - 70820; Other Eukaryotes - 24389 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR