K00319

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00319

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00319

Determination of introduced cDNA(s)

  • J033037A10 - Rice Full-length cDNAs - Original: J033037A10

    full reading [+] show sequence

    Nucleotide sequence: J033037A10 - full reading 
    GACTTGCCAC TGAAGAGTGG CTGCTTGCAG GCTTGGCTTG CAGCTGGGGA 
    GAGAGCATGA GCAGCGGCGG CGTCGGCGGC GGGAGCTTGG GCGCCGGCTT 
    GCTGTACCAC AAGTTCGTCA GCTTCGCGCT GGAGGAGACC CGACTCCGGA 
    CCACCCTCAC CCCTCACCCC TCCCAGGAAA AGTTCAAGTC TATAAAACCC 
    AATGATGATA ATACAGTTTT CAATGCTCTC TCATTCAGTG CACCGAAAAT 
    TAGATTGCTT CGCAGCTTGA CAATCGAGAA GAAAAACTCA TATCAGGTTC 
    TTGACTTTGC CGCTTTCTCT GAACCTGAAT ACGATCTTCC TATATTTTGC 
    GCCAACGTTT TTACAACTCA TGCACAAAGT ATTGTTGTAT TGGACCTCAA 
    TCCTCTATAT GATACTACAG TGCACAAGGA TTACAAAGAT AAGTACTATA 
    GGAGTATAAT GCCTCTTGTA CACAAGTATA ACGAGCTTCT TCCTTGGGGT 
    GGCAAGATTA CGAGTGAGTC ATTGAAGTTC TTCTCTCCAA TTGTGATCTG 
    GACAATATTT GAGTCAACTG AACACAACCA CCATGTTCTA CATTCAGCTT 
    TCGTGGATTA TTATAAGGTC TGGCTTGAAT TAATGGACCA AGCAATTAAA 
    GAAAATAACA AAGCAACAAT TGCTCGTAAC CAAGAAGAAC AACATAAATA 
    TCTCACATGG AGGGCTGAGA AGGATCCTGG CTATCCCCTT TTGAAGAAGT 
    TAATTGGTGA AAGTCGTGCC GAGGATCTGG TGATGGAGTT TCTGTTTGAA 
    GGAGTAAATA CTCTTGGAAC AAAATCATTT CTGGATTATT TCCCTGAATA 
    CGCCCGTGAT GATGGGTCAG TGAACAAGAA AAGGAGTATG ATCGGCAAGT 
    CTTTTGAAAC TAGGCCTTGG GACGCCAATG GAGAATTCAT TGGCGATGCC 
    GAAGCACAGT AAAATGTTCG CTACGCCTTT CGGCCTGATC AATCTCTCTT 
    ATGCTTGTAG TACTGTTTTC TTTTTTTTTA GAAAACTTAC ATTTTTCATG 
    CTCATATCCC TGAACTTGGA TTGAATAAGA AGAGATTGGT G

    Gene models with high sequence identity

    1. AT3G09150.2 [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
      E-value: 1e-86; Score: 317.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G09150.2

    Model type
    Protein coding
    Short Description
    phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
    Curator Summary
    Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
    Computational Description
    ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 407 Blast hits to 407 proteins in 62 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR