K00328

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00328

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00328

Determination of introduced cDNA(s)

  • J013132B11 - Rice Full-length cDNAs - Original: J013132B11

    full reading [+] show sequence

    Nucleotide sequence: J013132B11 - full reading
    GACACCGGCA CAGCCACACA AATCACAGCC TCCTTCAAAC CGGCAGCCGG 
    CGCCGGCTGC TGATCCTCTC CATCGCCGCC GTGGCCGTGC TGCCGGCGTG
    CCTCCAAATG ACTCCGCCCG GCAGTATCAG CACCACCTCG TCGAACCTTC
    GGGCCCAGCA AAAACCCTCA ATTCCCAAGA AACCGTGTGC TTTCGGAGCG
    CCACCGAGAC ACCTGCATCG CCCGTGCAAG AAGAACGCTG CCGTCTCGGT
    GGCGTGCACC GGGCAAGGCG AACAACGATC CAGCCCTGCC ATCGCGGCGC
    CGCAGGAGGC TCAGGCAGGC ACGTTTAGCG TCGAGTTCCG GACGCGGGAC
    GGGTGCCGGC TGGGCATCTC CAGGTACCCG GACTTCGCGT ACAACGCCCA
    GGGCGGCCGC GGCGTCGGCG TCGTCGCCAG CAGCGGCGAG GATAGTGGCA
    CGGTTCTGGT CGAGTTCGAC GTGTCAAGCC TGTACATCCC GGCGATGTCC
    GGCGCGACGA CCAAGTTCCT CGGGCTGCCG CTGCCGCCGT TCCTCAAGAT
    CGACATCTTG CCCGAGGCTC TCCGCGGAAA CATCGATCCA ACAAGTGGTC
    AGGTTGATCT GAAGTTCAGG TCGAGGTTCT GCTTCTCGGT TGGAAGCATC
    TACCGAGCAC CGCCGCTGTT CGTCGACACA ACGCTGACCT CCGAGGAGTC
    CAGTGGAGCC ATAAGACGAG GAACTGGAGA AAGGATGGAC GGCGAAGGGA
    GATGCAAGCT GGTAGGGGTG GCCGTCGTCG ACCCCATTGA TGACGTCTTC
    ATGAACACCT TCCTCAGCCT GCCGACCGAG TGCATCGCTT ACTTGAACGC
    CACCATCTCC ATCACTGAAC CAAGCTGATC TTGCCTGTTT CAGTTGGTTG
    TATAGATCTT AATGCGTGGT GAAACGCATG AATGTTGCAG GACGAAACTT
    GCACGGAAAA GAACAGACTG TACTATTGTA GTATTGGCCA AGGGAATGCC
    TCTTATTCAT

    Gene models with high sequence identity

    1. AT5G62140.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 1e-39; Score: 160.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62140.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013155I21 - Rice Full-length cDNAs - Original: J013155I21

    full reading [+] show sequence

    Nucleotide sequence: J013155I21 - full reading
    GTGAGTAAAC TAGATAAGCA ACCATATCCT GCCTAGTTCA CTACCTAAGA 
    GATATTGAGC TAGTAAAATG TTGCACGTTT GCTGCCAAAC ATACGGCTAT
    TCTCTCCTTC CTTGGTCACC AGGATGACAC AGGTGCTGGA ACCTTTTATG
    TACCAAGCAT ACCAATGACC AATGTGGAAT CAAGAATGAG TTTATCCAGA
    CTGGGATTCC TCCCTGGACT TGTGAACTGA CCCCTGCATT GCACCAAGGT
    GTGTATGGTG ATTGTGGTGG TGCATGGGTT GATGAGGAGT AAGATAAGTG
    GCTTTCTGTA AGTGCTTCTG CAATAATTGT TTAACTGAAA GCTGAAGAAT
    CTGCTATTCA TGCAGTCATA CGGTGAATCC GAAGACCGAG TCTGTGAAAT
    TAAGATATGC TGCCGAAAAA GGATGGTTGA ATGTTATAGA TGACTTAGAT
    CTATCAGCCT TTGTATTTCG TTTAGGTGGA ATATATGGGC CAGGAAGAAG
    GTTTCAGTCT GCTAAAATTT CAATCCATTT TATTTTGTAG TCTTTGAACC
    AAAAGTTATA TTTACTCCAG AACTGCATGA CTTGGCTACT GAAATTCTGA
    ATTCCACCAA TAAAATCAAC CTTTTAAAAT TAAAGATTTG GAGCACTTTT
    TATCTGATTT CAACCAATAC GGTGTACAAC TTGTGCTACA AACTTGTCAA
    GTATGTAATG GATGAAAATG AGAACTTTTT CATGGGAGGC TTTTGTTACA
    GTTCCCAATA CTTGCTTTCT AAAAGTGCCA CTATTATGAC CCTTTGTGTT
    GATTATTGCA GTGCAGTGGA CACAATAGCC AAGAGCAAAT CTTTTCACGA
    AGACAGAAAT CGAGGGAATC CAAACAGTAC ACTGCACGAA TTCATGTGGC
    TGACATTTGT CAGGCTATCC TGGCTAGCAT GAGCATCAGA AGTGCAAGGA
    GGATATACAA CGTAGTGGAT GACGACCCTG CCCCAAGATC TGAGGTTTTC
    GCATTTGCTC GGAGCTTGGT TGAGAGGAAG CATCCTGGCC TGATAATGGA
    TTCTGTAGTA CTACCAGCTA CTCAGGACAG AATCGTAGCT GCTGAGAAGC
    GGGTCTCTAA TGCTCGGCTA AAAGAGGAAC TTGGTGTAAA GCTTCTTCAC
    CCAACCTATA AATCAGGCCT GCAGAGTATT TTGGATTCTT GGAGTGTCGA
    ATCTTCTTTT TCAAATAGGA ATGTTGACGT TTAGCATGTG TATATAACTA
    TGTGAATTGT TTTGATTTTG TGCTTTGCTG GAACTATGAA CCCAAAAAAT
    TATATATTCC ATTATGTCCT CTTCC

    Gene models with high sequence identity

    1. AT1G19690.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 6e-25; Score: 112.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G19690.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 3422 Blast hits to 3422 proteins in 1044 species: Archae - 54; Bacteria - 2233; Metazoa - 3; Fungi - 5; Plants - 67; Viruses - 4; Other Eukaryotes - 1056 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR