K00337

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00337

Determination of introduced cDNA(s)

J023077P18 - Rice Full-length cDNAs - Original: J023077P18

full reading [+] show sequence

GGCTCTCTCT TCCTTTTCTC TTCCTTCTCA CCGATCCTGG AATGGTCTCG 
GAGGGTTCTT AGCTGGCTTT TCGATTGGAT TAGCAGCAGC CGGGTCAGAC 
GGAGCGGAGG CCGTGCCGGA GAAGGGAGAA GGAAAGTTTC AGGTGAACAT 
CTAACATGGA TGATCACATG GGAAGACGGA CAGTTGGTGG CCTTCTCTTC 
ACCAAGGGGG GCTCAATTCT TCTCTTCAGA GAAGACAGTG CGCGTCACAA 
GGCCACCAAT TGCTGCACGC GACACGGTTG CAGCAGCAAG CATTTGGCCG 
GCAAAGACAA GCAAACACAC AGGGCAGCAA CAGCAGCCAA GGAAGCATCA 
GAAACCCCTC GGAGATCACA GATTTTCAGG AAACCCAGCA CGAGGACTCC 
TCAGGGAAGT ACTGCTACTG ATAACATCAG CAGGAATGCA GCAAGCTCCT 
ATAGCGAAAA CGACAATAGG CCAAGAGAAA CTCCAGGGCG TGATTTAATC 
GCTCGTCTCA AAGAGAGGGT CAATGCATCA AGAAAACGAT CATTGAACAG 
AGAAAACAGT CCATCATCAC CAAATGGATT AAGTGCTACT TCCTCAAGTA 
GTAGCCGCAC AGTCTCAAGA CCGTCGCATC GGGCAGCTTC CCGAATAAGG 
AAGGCAGATG AAGGTGCAAA TGCAGGAGCT GTAAATGTAC GCAGAGACAG 
CAGTGGAGAT ACCAGGAGGA ATTCAGATAG GGATGTCGAT GATTTCTTGC 
TAGTTGAGCA GGCAGCAAGA GATAGCACTG AAGGATTCAT ATCTGGATTC 
TTGGCAAGAT ACAGAAGTAA TCATCAGGGA CTACTTTCAT CTTTGGACGA 
CAGCATAGAG GATGCAAATG GGTACTGGCG CTTCAATATG GAAGGAAGTG 
AAGAGCTTGA GAACTACTTC ATATTCAATG ATCGGTACAG AGGGATGAGA 
ATGGACATTG ACGGCATGTC TTATGAGGAA TTGCTAGCAT TGGGAGATAG 
AATTGGCACC GTAAGCACTG GCCTTTCAGA AGACGCGCTG TCCAAGTGTC 
TAGACAGAAG CATGTACATG GCCACTACTT CAGGAACTCA TGAAGATTGT 
GAGAGAAAAT GCAGCATATG CCAGGAGGAA TATTCAGATG GTGAGGAGGT 
GGGCAAGATG GTCTGCAAAC ATTACTACCA CTTCTCCTGC ATAAAGAACT 
GGCTCCGGCA GAAGAACTGG TGTCCCATTT GTAAATCCGT CGCTCTGAAT 
ACCAACTAGC ACTAGCAGGG TGCTTCTTCA GAAACCAAAT GTACAGATTC 
TCCATGAATG TTCTACCCAG ACACAATTTG CATTCTTTTT TTGATACTCT 
TTTAGATCGA ACCATTCGTT CGCATCCTCC AGACCTTTTG CATTATTGGT 
CTCCTTCAGT TCACAATTTG CACTTGTGCA GTACGAACAT GGAAAGGAAC 
AGGAAATAAC TCCTGAAAAA TGAAAAAAAA AATATAGTTC CCC

Gene models with high sequence identity

AT5G10650.2 [+] show detail - RING/U-box superfamily protein
E-value: 5e-35; Score: 145.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc finger, C3HC4 RING-type	0.00000035
HMMSmart	Zinc finger, RING-type	0.00000074
Gene3D	no description	0.00000000015
ProfileScan	Zinc finger, RING-type	11.855
HMMPanther	RING FINGER PROTEIN 24-RELATED	0.0000000000096
superfamily	RING/U-box	0.000000000000079

See the detailed result >

AT5G10650.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G24870.2); Has 11297 Blast hits to 9396 proteins in 312 species: Archae - 0; Bacteria - 114; Metazoa - 2874; Fungi - 769; Plants - 4627; Viruses - 60; Other Eukaryotes - 2853 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033044B03 - Rice Full-length cDNAs - Original: J033044B03

full reading [+] show sequence

GGTGACTCTT GGTTCGCTTT GGGTCATTCC GTTCCGCCGC ATCCTCCTCT 
GCCGTAGCTT TAGGTTTTAC CTCCTCTCCC GACTCTCCTC CGCTTTAATC 
GCACCGCCGG CCGCCGGCGA CCATGTTCAA AAAGTTCTCT TTTGAAGATA 
TATCTGCGCA GAATCAAGTT AAGGCCTCTG TGCAGCGGAA GATTCGGCAA 
AGTATTGCTG ATGAGTACCC TGGCCTCGAA CCTCTACTAG ATGACTTACT 
TCCAAAGAAG TCGCCTATGA TTGTTGTTAA ATGCCAAAAT CATCTGAATC 
TTGTGGTGGT GAATAATGTC CCACTGTTTT TCAATATCCG TGATGGTCCT 
TACATGCCAA CCTTGCGCCT TCTTCATCAG TATCCTGACA TCATGAAGAA 
GTTCCAAGTG GATAGAGGCG CTATCAAGTT TGTTCTCTCT GGTGCAAACA 
TAATGTGTCC TGGATTGACA TCTCCAGGTG GTTCCTTGGA TGTTGAAGTT 
GAGGAGGAAA CACCAGTGGC TATAATGGCT GAAGGCAAAC AGCATGCATT 
GGCAATTGGA TATACAAAGA TGTCAGCAAA GGACATTAAG ACTATCAACA 
AAGGAATTGG AGTTGACAAT ATGCACTATC TAAATGATGG CCTGTGGAAG 
ATGGAACGGC TCGAATAAGT AAAATCCACT AGGGAAGCAT AATTTGCTGC 
GCCATATTGA AATGTAATGA GGGCTGGAAT TATGTATCAA TGCATCTTGT 
GTCATGTAAA CACATAAAAT AGCCAGCAGC TACATGGTGC TCCAAGCCTG 
TTCGAGTTTA CTGTGACCAT CAAGTTTTGG AGATGTTTGG CAAAACTTTG 
ACTGATAGTG CTGTGTTCAA CGCTTCACTT GGTATTATCA ATCCAGAACA 
CTGTACAATG TTGGTAATCC TATCACTAAT GATTTGCACT TATTACCAAT 
AAAATTTCAG ATGAGCT

Gene models with high sequence identity

AT1G09150.1 [+] show detail - pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
E-value: 5e-70; Score: 261.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	MCT-1 PROTEIN	1.7e-87
HMMPIR	Translation machinery-associated RNA binding protein, predicted	8.8e-51
HMMSmart	Pseudouridine synthase/archaeosine transglycosylase	0.0000000000009
HMMPfam	Pseudouridine synthase/archaeosine transglycosylase	9.1e-21
superfamily	Pseudouridine synthase/archaeosine transglycosylase-like	7.7e-21
HMMTigr	Uncharacterised domain 2	1.1e-26
ProfileScan	Pseudouridine synthase/archaeosine transglycosylase	14.501
Gene3D	no description	2.4e-20

See the detailed result >

AT1G09150.1

Model type: Protein coding
Short Description: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
Computational Description: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link: InterPro Scan - TAIR