K00337

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00337

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00337

Determination of introduced cDNA(s)

  • J023077P18 - Rice Full-length cDNAs - Original: J023077P18

    full reading [+] show sequence

    Nucleotide sequence: J023077P18 - full reading
    GGCTCTCTCT TCCTTTTCTC TTCCTTCTCA CCGATCCTGG AATGGTCTCG 
    GAGGGTTCTT AGCTGGCTTT TCGATTGGAT TAGCAGCAGC CGGGTCAGAC
    GGAGCGGAGG CCGTGCCGGA GAAGGGAGAA GGAAAGTTTC AGGTGAACAT
    CTAACATGGA TGATCACATG GGAAGACGGA CAGTTGGTGG CCTTCTCTTC
    ACCAAGGGGG GCTCAATTCT TCTCTTCAGA GAAGACAGTG CGCGTCACAA
    GGCCACCAAT TGCTGCACGC GACACGGTTG CAGCAGCAAG CATTTGGCCG
    GCAAAGACAA GCAAACACAC AGGGCAGCAA CAGCAGCCAA GGAAGCATCA
    GAAACCCCTC GGAGATCACA GATTTTCAGG AAACCCAGCA CGAGGACTCC
    TCAGGGAAGT ACTGCTACTG ATAACATCAG CAGGAATGCA GCAAGCTCCT
    ATAGCGAAAA CGACAATAGG CCAAGAGAAA CTCCAGGGCG TGATTTAATC
    GCTCGTCTCA AAGAGAGGGT CAATGCATCA AGAAAACGAT CATTGAACAG
    AGAAAACAGT CCATCATCAC CAAATGGATT AAGTGCTACT TCCTCAAGTA
    GTAGCCGCAC AGTCTCAAGA CCGTCGCATC GGGCAGCTTC CCGAATAAGG
    AAGGCAGATG AAGGTGCAAA TGCAGGAGCT GTAAATGTAC GCAGAGACAG
    CAGTGGAGAT ACCAGGAGGA ATTCAGATAG GGATGTCGAT GATTTCTTGC
    TAGTTGAGCA GGCAGCAAGA GATAGCACTG AAGGATTCAT ATCTGGATTC
    TTGGCAAGAT ACAGAAGTAA TCATCAGGGA CTACTTTCAT CTTTGGACGA
    CAGCATAGAG GATGCAAATG GGTACTGGCG CTTCAATATG GAAGGAAGTG
    AAGAGCTTGA GAACTACTTC ATATTCAATG ATCGGTACAG AGGGATGAGA
    ATGGACATTG ACGGCATGTC TTATGAGGAA TTGCTAGCAT TGGGAGATAG
    AATTGGCACC GTAAGCACTG GCCTTTCAGA AGACGCGCTG TCCAAGTGTC
    TAGACAGAAG CATGTACATG GCCACTACTT CAGGAACTCA TGAAGATTGT
    GAGAGAAAAT GCAGCATATG CCAGGAGGAA TATTCAGATG GTGAGGAGGT
    GGGCAAGATG GTCTGCAAAC ATTACTACCA CTTCTCCTGC ATAAAGAACT
    GGCTCCGGCA GAAGAACTGG TGTCCCATTT GTAAATCCGT CGCTCTGAAT
    ACCAACTAGC ACTAGCAGGG TGCTTCTTCA GAAACCAAAT GTACAGATTC
    TCCATGAATG TTCTACCCAG ACACAATTTG CATTCTTTTT TTGATACTCT
    TTTAGATCGA ACCATTCGTT CGCATCCTCC AGACCTTTTG CATTATTGGT
    CTCCTTCAGT TCACAATTTG CACTTGTGCA GTACGAACAT GGAAAGGAAC
    AGGAAATAAC TCCTGAAAAA TGAAAAAAAA AATATAGTTC CCC

    Gene models with high sequence identity

    1. AT5G10650.2 [+] show detail - RING/U-box superfamily protein
      E-value: 5e-35; Score: 145.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 3.5e-07
    HMMSmart Zinc finger, RING-type 7.4e-07
    Gene3D no description 1.5e-10
    ProfileScan Zinc finger, RING-type 11.855
    HMMPanther RING FINGER PROTEIN 24-RELATED 9.6e-12
    superfamily RING/U-box 7.9e-14

    See the detailed result >

    AT5G10650.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G24870.2); Has 11297 Blast hits to 9396 proteins in 312 species: Archae - 0; Bacteria - 114; Metazoa - 2874; Fungi - 769; Plants - 4627; Viruses - 60; Other Eukaryotes - 2853 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033044B03 - Rice Full-length cDNAs - Original: J033044B03

    full reading [+] show sequence

    Nucleotide sequence: J033044B03 - full reading
    GGTGACTCTT GGTTCGCTTT GGGTCATTCC GTTCCGCCGC ATCCTCCTCT 
    GCCGTAGCTT TAGGTTTTAC CTCCTCTCCC GACTCTCCTC CGCTTTAATC
    GCACCGCCGG CCGCCGGCGA CCATGTTCAA AAAGTTCTCT TTTGAAGATA
    TATCTGCGCA GAATCAAGTT AAGGCCTCTG TGCAGCGGAA GATTCGGCAA
    AGTATTGCTG ATGAGTACCC TGGCCTCGAA CCTCTACTAG ATGACTTACT
    TCCAAAGAAG TCGCCTATGA TTGTTGTTAA ATGCCAAAAT CATCTGAATC
    TTGTGGTGGT GAATAATGTC CCACTGTTTT TCAATATCCG TGATGGTCCT
    TACATGCCAA CCTTGCGCCT TCTTCATCAG TATCCTGACA TCATGAAGAA
    GTTCCAAGTG GATAGAGGCG CTATCAAGTT TGTTCTCTCT GGTGCAAACA
    TAATGTGTCC TGGATTGACA TCTCCAGGTG GTTCCTTGGA TGTTGAAGTT
    GAGGAGGAAA CACCAGTGGC TATAATGGCT GAAGGCAAAC AGCATGCATT
    GGCAATTGGA TATACAAAGA TGTCAGCAAA GGACATTAAG ACTATCAACA
    AAGGAATTGG AGTTGACAAT ATGCACTATC TAAATGATGG CCTGTGGAAG
    ATGGAACGGC TCGAATAAGT AAAATCCACT AGGGAAGCAT AATTTGCTGC
    GCCATATTGA AATGTAATGA GGGCTGGAAT TATGTATCAA TGCATCTTGT
    GTCATGTAAA CACATAAAAT AGCCAGCAGC TACATGGTGC TCCAAGCCTG
    TTCGAGTTTA CTGTGACCAT CAAGTTTTGG AGATGTTTGG CAAAACTTTG
    ACTGATAGTG CTGTGTTCAA CGCTTCACTT GGTATTATCA ATCCAGAACA
    CTGTACAATG TTGGTAATCC TATCACTAAT GATTTGCACT TATTACCAAT
    AAAATTTCAG ATGAGCT

    Gene models with high sequence identity

    1. AT1G09150.1 [+] show detail - pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
      E-value: 5e-70; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MCT-1 PROTEIN 1.7e-87
    HMMPIR Translation machinery-associated RNA binding protein, predicted 8.8e-51
    HMMSmart Pseudouridine synthase/archaeosine transglycosylase 9e-13
    HMMPfam Pseudouridine synthase/archaeosine transglycosylase 9.1e-21
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 7.7e-21
    HMMTigr Uncharacterised domain 2 1.1e-26
    ProfileScan Pseudouridine synthase/archaeosine transglycosylase 14.501
    Gene3D no description 2.4e-20

    See the detailed result >

    AT1G09150.1

    Model type
    Protein coding
    Short Description
    pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
    Computational Description
    pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR