K00405

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00405

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00405

Determination of introduced cDNA(s)

  • J033037F09 - Rice Full-length cDNAs - Original: J033037F09

    full reading [+] show sequence

    Nucleotide sequence: J033037F09 - full reading 
    GCCCTTCCGT CCTCCTTCCT CCTCCCCCCT CCCCGGTTCG ACGCGCACAT 
    CGAACCCCGA CGACCACCAC CGCCCGGCCG CCGCCGCCGC CGACGCGGTC 
    GTCCTCTCCG GCTAGGATCT GGTGCATCTA ACTATTCAAG AAATAGAAAA 
    GCATGAGCTA CTTCACTTGC AAGCCGAACA GTGGGCTTAT TGTGGATAGG 
    CCCGTCGCTG GTCTTGGGAG GACAGGCAGA TTACTATCTC ATCCTCAATA 
    TTCCCTAACG ACACATTCTG TTCGATTTCC CAAGCTTCAA AAGCAGGTGT 
    ACCCGCGACT TGTTCTTGTT GCTGCTAGCC AGAAAAAGCT TCCTCCTCTA 
    TGTGCCTCGA GTGGAAAGGT GAACCCAGAG GCAGAAAATG ATCCCTTTAT 
    GGAATCTTTG AAGAAGGCCA TGGATGATGC CAAAAAGCCA CGGCCTATTC 
    AAGACTTGCT GAAAGAACAG ATAGCTAAGC TGAGAGAACA AGGATCTGGT 
    GGAGGTGGAG GAAACCGAAA TCGTCGTGGA GGCAGTGGTG ATTCTGGTGG 
    CCCAGAAGAT GAATCATTCA AGGAATCATT GGATGAACTA GTCCAAGTTA 
    TCTTAGCAAC CGTTGCATTC ATTCTTGTGT ACATCCATAT AATCAGAGGT 
    GAGGAGCTGT ATCGCCTCGC CAGGGACTAC ACCAGATATC TTGTTACTGG 
    CAAGCGTACT GCGCGGTTGA AACGTGCCAT GCAAAAATGG CGCAATTTCT 
    CAGAGAGCTT TATGCAAAGT GAAGGCTCAC AAGAAGACCA GTATGAAAGA 
    GCAGCCACCT CCAAACCAAC TTGGTGGCAA CAGCCTCAAA AGTTTGTTCA 
    TCTTATGGAG GAACTCTGCC GAGGAAATTG GCGCCCGCAT GCGCAGGAGT 
    CTTAGTTCAG GTGCTCCCTT GTTCCTTTTT GGCCTTCTGA AGCACATGGA 
    TGTGGCGATG AGCAGTACTG TTTTCATGGC TGGTGCAATG ACCTGGAATC 
    TGGATAGCGT TCCTTGCCCG GGGCAGTGAT TTGTTCTTCT TTGTTCGTTA 
    ATGCGTATTT TCTACGTTTT GTTAAGCACT AACCAAGTGA GTAACTTCCT 
    GGCAATTTTG TAGTTGATGA GATCGCATAT ATAAGCTAGC CGGCGTCTCA 
    TGTCATATGC GGCAAATTGT AGATTATGTT GAAGTTGAAC CGGTGTAGCT 
    TGGTTTCACT GCATTTTGGT TTGGTTTCCT TAGCGTTGGA ATGTAATGGG 
    TCACCCTTGA CAACGTGGCT TC

    Gene models with high sequence identity

    1. AT2G43630.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: ch...
      E-value: 6e-19; Score: 92.40

     

    InterPro Scan Digest

    See the detailed result >

    AT2G43630.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR