K00409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00409

Determination of introduced cDNA(s)

  • J013064H13 - Rice Full-length cDNAs - Original: J013064H13

    full reading [+] show sequence

    Nucleotide sequence: J013064H13 - full reading
    GATAGTCATA TTTCATCAGT TCCTCGTAAG AACAGAGAAC TCGAGAGGTT 
    GCGCTTCAGT GCCGCGAAGA AAGGACGAGC TATTCCACCC TCCCGGTCGG
    TGCGTTTGCG ATGAAGAAGA CGGTGGTTCT CTACCCCGGC CTCGCCGTCG
    GCCACCTGAA CCCCATGATG GAGCTCGCCG ACGTCTTCCT GGACCACGGC
    TACGCCGTCG CCGTGGCGCT CATCGACCCG TCGGTCATGG AGAACGAAGC
    CAACCTCGCC GCCGCCGTCG CCCGCGCCGT CTCCTCCAAG AGCTCCACCA
    TCTCCTTCCA CACGCTCCCG GGCATCCCGG ACCCTCCCTC GCTCGCCTTC
    AACGATCAGT TCTTCAAGAA CTACTTCGAC CTCGTGCGAC GCCACAACGA
    GCACCTCCAC GACTTCCTCC GCTCCGTGCG GGGCCTCCAT GCCGTGGTCA
    TCGACGCATC GTGCGCCCAT GCCCATGAAG CCGCGAGGAA GCTGGGAGTC
    CCTGTCTTGA TGTTCTACCC GTCCAACGCC GGCCACCTCG CCGTTAACTT
    GCAGGCTCCT CTGCTTGTTG ACGGGTTCAA GAAGCATCTG GGAGGAGATA
    GTACTAGTCC TGTCGAGTTC TTGGGTGTTC GACCCATGTC GGCTTCTCAC
    TTGGCTGGCC TTTTTGGGCC GATTAGCGAG GTGAACAAGG ATTTCGAGGC
    CATGATTTTT GCCGGTGCGC GCATGAAGGC GGAGTTCGAC GGAATCCTGA
    TCAACACGTC CGTGTCGCTG GAGGAGCGGG CGCTGCGAGC TCTCGCCGAC
    CCGCGCTGCT GCCCCGACGG CGTGGTAATC CCGCCGGTGT ACGCCGTGGG
    GCCACTGGTC GACAAAGCCG CCTCCGCCGC CGGTGATGAG AGCAGCCGAC
    ATCAGTGCCT CGTGTGGCTC GACTGACAAC CCGACCGCAG CGTCATGTTC
    CTCTGCTTCG GGAGCATCGC CGACGCATGT GAACAGTCCG ACCAGCAGCT
    GAATGAGATC GCCGCCGGCC TGGACAAGTC CGGCCACCGC TTCCTGTGGG
    TGGTTCGGGC AACCAGCACC CAACACCTCG ACGCGCTCCT ACCGGAGGTG
    TTCTTCGCAA GAACCAGCGG CCGCGGCCTC GTCGTCAACA GCTGGGTGCC
    CCAGCCGAGC ATCCTCCGCC ACCGCGCCAC CGCCGCGTTC GTGACGCACT
    GCGGGTGGAA CTCGGTGCTA GAGGGGATCA CCGCGGGGGT GCCGATGCTC
    TGCTGGCCGC TGTACGCGGA GCAGAGGATG AACAAGGTGC TCATGGTGGA
    GGGCATGGGC GTCGGCGTGG AGATGGAGGG ATGGCTGGAA GGGCTGGTGA
    CCGCCGAGGA GGTGGAGACG AAGGTGAGGC TGGTCATGGA GTCCGAGCAT
    GGAAGGAAGG TTAGAGAGCG TGTCGAGGCG CACAGAGATG GCGTGGCCAT
    GGCCTGGAAA GATGGTGGCT CGTCGCGTGT CGCGTTTGCC CGTCTCATGT
    CTGAATTACT CAACGTGTAA GGTTGAAAAT AGTATGGAAT TTCCCAATTG
    TATCTTACTA CTCCGTTCAA AAATATAATA ATTTTTC

    Gene models with high sequence identity

    1. AT3G16520.3 [+] show detail - UDP-glucosyl transferase 88A1
      E-value: 2e-58; Score: 223.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PROKAR_LIPOPROTEIN 5
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 0.00000000057
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 2.5e-31
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 5.8e-31
    Gene3D no description 0.0000000000000036
    HMMPanther UDP-GLUCOSYLTRANSFERASE 4e-24
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 4e-24
    HMMPanther UDP-GLUCOSYLTRANSFERASE 9.1e-61
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 9.1e-61
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0

    See the detailed result >

    AT3G16520.3

    Model type
    Protein coding
    Short Description
    UDP-glucosyl transferase 88A1
    Computational Description
    UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR