K00411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00411

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00411

Determination of introduced cDNA(s)

J033000L02 - Rice Full-length cDNAs - Original: J033000L02

full reading [+] show sequence

GAGCGGCGGC TCTCTTGGCG TGCTCCTGCT CAGCTGAGCT CGGGTGAGCT 
CTTTCTACCT CCAAGATTTC CTCCTCCTAC CTCCACTCCA CTCGCCTCAC 
CTCAGCTCAC CTCAGCGTCG TCTTCTTCCT TCCGCAACCT CGCAGGTTGA 
ACCGGAGAGC GGGAGGAGCG AGTGAGTGGT GGTGGAGGCC ATGGCGGAGG 
ATGAGGCGGC CAGCGCCAAG AAGCTCTTCT CCGCCTCCGA TGTCGTAGGG 
CACGCGTCCA GGAAGGATTG CTGGGTCGTC ATCCATGGCA AGGTGTATGA 
TGTGACCAAG TTCTTGGAAG ACCACCCTGG TGGAGAGGAT GTTCTCCTGC 
ATGCATCTGG TCAGATGAGA TTCAGATTCC TCCATTCCTA TCAACTGTAA 
TGATAATGTT TGATGCTAAA GCTGTGATGC TATTGAAACT ATTTACGACC 
TTATCTGCTC ATCAATTTAA TTGTGATGAT AAATGCTCGG ATTCGTTGCT 
GTCAGTTAAT TTTCTTCATT TTTGGTGGTC AGTTCAAGCC TGCAGTAGTA 
GAATTAGATT GGTTCATGTT GTTTAGTTAA GAGAAACCAA TTGTATCATG 
CTGCTCTGAT CTGAATAGAT GGTTGTGTTC AACACCTAGT CAACTGCCAT 
TAGCAATTTA TCATAAATCA GCCCGTACGG TATTTGCTTT TGTAATGCAG 
CCAGTGGGCA TCGATGCTGA TTCATGATTT GTACCACCAG CTTCTGTTAA 
CCTTGTATTG TGCCACGTGG AAGCCTCATA ACCATAGGCA TATTCAACTC 
CTGTTGTTCT AATTGTCTAA GAGAATTAAC AAAATTAAAA TCATGATAGA 
GCCGCTTGTT GCTTAATTCT TGCAAATATC TTGCCTTCTA AGTCATGGAA 
TAACATGCAT TTTACATCAT GAAAATTCTC AGTTATTCAT TACCAAACCA 
ATATAATGAT GGCTTGCTAC TGTTTTCTTG GGAGACAAAA CAATGCCAGG 
GCAATTTTAG TTTCAATATT TCTAAATACC GTACGGTCTG ATTAATTTAT 
GATAAATATG TTGTCCCAGC AGAGACCAAT GCATAGAAGT TAATGCTTTT 
TTTACTTTTC GGATGTTGCT TTCCTCTGGA CTAAATTTCT GAGCCTCACT 
AATCACACTA AATTTGCTAT TGCAAATGTT CCCCTTGTAT TGTACTGATT 
CCATTGTACT TGTTCCGTTT AATTGCACAT GCTATGTTGA TATATTACTT 
TAACTAGATG ACAAAAATAA AATGTTAACA TATGGTGCGG TTCTGAAAGA 
AAGACATTTG GAATAGATGC AAGGTTTATT GACAAGTTTC TATTTTCTGT 
TGCCTCTGTA TTTAATCAAT TCTTGAAGCC TCTGGGGATG CCACGGAGGC 
ATTTGAAGAT GTGGGGCACA GCACATCAGC CATCAGCATG ATGAACAACT 
ACTTGATTGG AAGCATCAAG GACTATGTGC CTCCTAGTGC ATCAGAGGCT 
ACAACCATTG GCGGCAATGA TGTGCCGCCA AACTTCAGAA GGATGCCACA 
GAAGAAAGGA CCTCCTGCTC CCAACACCTT TCTGGACTTC CTGCTCCCTC 
TGTTTGTGCT CGGCCTTGCC TTTGCCGCTT GGTACTACCT GACCTTCATT 
GCCAAGGCCT AGTAAATTTG GTGAAGGTTT GAAGTATTGA ACATTTTACT 
ATGCCACGTC TGCTTCAGCG ACACATGGAG ATATATTCTG GTCAGTTCTA 
AGTTTTATTA TGAGGTTTCT GGCTGTGAAT TAGAAATGTC ATCGTATTAT 
TATTTGTTAC CAAATTGTTG GCTTTGCTTC GAAGTTGGTA CCACTCTTAC 
ATGTAAATGG CGATGGCTGC ATCAGTAAAA TGTATGGATG GGGCATTTTC 
CCTTTCGCC

Gene models with high sequence identity

AT5G48810.1 [+] show detail - cytochrome B5 isoform D
E-value: 5e-13; Score: 73.60

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Cytochrome b5	9.5e-18
ProfileScan	Cytochrome b5	18.794
HMMPanther	CYTOCHROME B5	2.6e-18
HMMPanther	CYTOCHROME B5	2.1e-11
Gene3D	Cytochrome b5	2.9e-16
FPrintScan	Cytochrome b5	5.3e-06
FPrintScan	Cytochrome b5	5.3e-06
superfamily	Cytochrome b5	1.5e-19
PatternScan	Cytochrome b5, heme-binding site	0

See the detailed result >

AT5G48810.1

Model type: Protein coding
Short Description: cytochrome B5 isoform D
Curator Summary: Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.
Computational Description: cytochrome B5 isoform D (CB5-D); FUNCTIONS IN: heme binding; INVOLVED IN: defense response to bacterium; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR