K00421

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00421

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00421

Determination of introduced cDNA(s)

  • J013059A18 - Rice Full-length cDNAs - Original: J013059A18

    full reading [+] show sequence

    Nucleotide sequence: J013059A18 - full reading 
    GGCGCGCAGA TGGAAACGCA ACGCTGTTGC TAGCCCAGAG AAAGAAAGAC 
    GAGGAAAGGA GGAGCAGGCG GCGGCGTCCA GGGTCCAGCA GCATAGCATT 
    GAGCTTGAGC ATGGTTTCCC CTTCGCTTCG GATCCCCGCG GCCGCGCGCG 
    TCTTCGATCC CGCCATCAAC ACCCGCTGCC CTCCGCCCCA CGCCGTCGTC 
    ATGCGCATGC GCAGTCGCAG CCGCCGTTCC ATCGCTGCCT CCGCTTCGCC 
    GCCGGGGGAC CCCTCCATCC GCGACCCCAT CTCACTGCCA AGGCCGCTCA 
    CCAGCGCGGA TCTGATGGAG GCCAGCGGAG ACGGTTTGAA GGTCGCATAC 
    CAGGGATGCC CGGGTGCCTA CAGTGAGGCC GCCGCCAAGA AGGCGTACCC 
    GAGTTGCCAC ACCGTGCCCT GCGAATACTT CGAGACCGCC TTTCAGGCTG 
    TCGAAAATTG GGTGGCTGAC CGCGCGGTCC TGCCACTTGA GAATTCCTTG 
    GGTGGTAGCA TCCATCGAAA CTATGACCTT CTACTTCGCC ATAGGCTGCA 
    CATTGTTGGT GAGGTGCGCC TTGCAGTTCG CCATTGCTTG TTAGCAAATC 
    GTGGTGTGAA GATCCAAAAT TTGAGAAGTG CCATGAGCCA TCCTCAAGCT 
    CTTGCACAGT GTGAACAAAC ACTGACAAAG TTAGGCATCG AGCATAGAGA 
    AGCTGTTGAC GATACAGCAG GTGCAGCAAA GCTTATTGCA GAACAAAAGC 
    TCCAGGACAC TGGAGCAGTT GCTAGTTCAT TGGCAGCTCA ACTTTATGGA 
    CTGGATATTC TTGCAGAAAA TATTCAGGAT GACACCGATA ATGTAACACG 
    CTTTATGATG CTGGCTCGGG AACCCATTAT TCCTCGTACT GATAAGCCAT 
    TCAAGACTAG CATAGTCTTT TCTTTGGAAG AAGGGCCTGG GCAACTATTT 
    AAGGCGCTGG CAGTGTTTGC ACTGAGAAAA ATTAACCTCA CCAAGATGGA 
    AAGCCGTCCA CACAAGAAAA AGCCTCTACG TATAGCTGAT GATAATTGTT 
    CTGCACCATT GAAGCATTTC GACTACCTCT TCTATGTAGA TCTTGAGGCG 
    TCAATGGCTG ATCCAAATGC TCAAAATGCT CTGGCAAACT TAAAGGAGTT 
    CGCAACCTTT CTAAGAGTTC TTGGGAGCTA TCCTACCGAT GTCAGTGAAG 
    CATGAATTGT CAAGTACCTG TTTTGAATAT ACTTGGACCA GCGTTATCAT 
    GAATGAGCTT ACGATTGGTT CTATCGCCAA CTTGGAAGCA CCGATAGCAG 
    AAGTGGTACT AACTTGGAGG GTAACGATAT GACATATTGA TAGAGAGAAT 
    GGCACAAAGG TGCACGATGT TTTGTTCTTG TTTTTAAGTT CTCATTGTTG 
    TGTTAGTGAC GATTTCCTTT TGAAAGGGGC CTTTATGCAA TATCCCACTT 
    ACCCAAAAGA ACAGTGATGA GATATCAAAG CTAAGGCCAA AGAATTGGTT 
    GTTTGTC

    Gene models with high sequence identity

    1. AT3G07630.2 [+] show detail - arogenate dehydratase 2
      E-value: 2e-119; Score: 426.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Prephenate dehydratase 46.612
    HMMPfam Prephenate dehydratase 6.6e-58
    HMMPfam Amino acid-binding ACT 6.2e-05
    HMMPanther PREPHENATE DEHYDRATASE (P PROTEIN) 1.5e-113
    PatternScan Prephenate dehydratase, conserved site 0
    PatternScan Prephenate dehydratase, conserved site 0
    superfamily ACT-like 1.1e-27

    See the detailed result >

    AT3G07630.2

    Model type
    Protein coding
    Short Description
    arogenate dehydratase 2
    Curator Summary
    Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].
    Computational Description
    arogenate dehydratase 2 (ADT2); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Amino acid-binding ACT (InterPro:IPR002912), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: arogenate dehydratase 1 (TAIR:AT1G11790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR