K00421

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00421

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00421

Determination of introduced cDNA(s)

  • J013059A18 - Rice Full-length cDNAs - Original: J013059A18

    full reading [+] show sequence

    Nucleotide sequence: J013059A18 - full reading
    GGCGCGCAGA TGGAAACGCA ACGCTGTTGC TAGCCCAGAG AAAGAAAGAC 
    GAGGAAAGGA GGAGCAGGCG GCGGCGTCCA GGGTCCAGCA GCATAGCATT
    GAGCTTGAGC ATGGTTTCCC CTTCGCTTCG GATCCCCGCG GCCGCGCGCG
    TCTTCGATCC CGCCATCAAC ACCCGCTGCC CTCCGCCCCA CGCCGTCGTC
    ATGCGCATGC GCAGTCGCAG CCGCCGTTCC ATCGCTGCCT CCGCTTCGCC
    GCCGGGGGAC CCCTCCATCC GCGACCCCAT CTCACTGCCA AGGCCGCTCA
    CCAGCGCGGA TCTGATGGAG GCCAGCGGAG ACGGTTTGAA GGTCGCATAC
    CAGGGATGCC CGGGTGCCTA CAGTGAGGCC GCCGCCAAGA AGGCGTACCC
    GAGTTGCCAC ACCGTGCCCT GCGAATACTT CGAGACCGCC TTTCAGGCTG
    TCGAAAATTG GGTGGCTGAC CGCGCGGTCC TGCCACTTGA GAATTCCTTG
    GGTGGTAGCA TCCATCGAAA CTATGACCTT CTACTTCGCC ATAGGCTGCA
    CATTGTTGGT GAGGTGCGCC TTGCAGTTCG CCATTGCTTG TTAGCAAATC
    GTGGTGTGAA GATCCAAAAT TTGAGAAGTG CCATGAGCCA TCCTCAAGCT
    CTTGCACAGT GTGAACAAAC ACTGACAAAG TTAGGCATCG AGCATAGAGA
    AGCTGTTGAC GATACAGCAG GTGCAGCAAA GCTTATTGCA GAACAAAAGC
    TCCAGGACAC TGGAGCAGTT GCTAGTTCAT TGGCAGCTCA ACTTTATGGA
    CTGGATATTC TTGCAGAAAA TATTCAGGAT GACACCGATA ATGTAACACG
    CTTTATGATG CTGGCTCGGG AACCCATTAT TCCTCGTACT GATAAGCCAT
    TCAAGACTAG CATAGTCTTT TCTTTGGAAG AAGGGCCTGG GCAACTATTT
    AAGGCGCTGG CAGTGTTTGC ACTGAGAAAA ATTAACCTCA CCAAGATGGA
    AAGCCGTCCA CACAAGAAAA AGCCTCTACG TATAGCTGAT GATAATTGTT
    CTGCACCATT GAAGCATTTC GACTACCTCT TCTATGTAGA TCTTGAGGCG
    TCAATGGCTG ATCCAAATGC TCAAAATGCT CTGGCAAACT TAAAGGAGTT
    CGCAACCTTT CTAAGAGTTC TTGGGAGCTA TCCTACCGAT GTCAGTGAAG
    CATGAATTGT CAAGTACCTG TTTTGAATAT ACTTGGACCA GCGTTATCAT
    GAATGAGCTT ACGATTGGTT CTATCGCCAA CTTGGAAGCA CCGATAGCAG
    AAGTGGTACT AACTTGGAGG GTAACGATAT GACATATTGA TAGAGAGAAT
    GGCACAAAGG TGCACGATGT TTTGTTCTTG TTTTTAAGTT CTCATTGTTG
    TGTTAGTGAC GATTTCCTTT TGAAAGGGGC CTTTATGCAA TATCCCACTT
    ACCCAAAAGA ACAGTGATGA GATATCAAAG CTAAGGCCAA AGAATTGGTT
    GTTTGTC

    Gene models with high sequence identity

    1. AT3G07630.2 [+] show detail - arogenate dehydratase 2
      E-value: 2e-119; Score: 426.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Prephenate dehydratase 46.612
    HMMPfam Prephenate dehydratase 6.6e-58
    HMMPfam Amino acid-binding ACT 6.2e-05
    HMMPanther PREPHENATE DEHYDRATASE (P PROTEIN) 1.5e-113
    PatternScan Prephenate dehydratase, conserved site 0
    PatternScan Prephenate dehydratase, conserved site 0
    superfamily ACT-like 1.1e-27

    See the detailed result >

    AT3G07630.2

    Model type
    Protein coding
    Short Description
    arogenate dehydratase 2
    Curator Summary
    Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].
    Computational Description
    arogenate dehydratase 2 (ADT2); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Amino acid-binding ACT (InterPro:IPR002912), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: arogenate dehydratase 1 (TAIR:AT1G11790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR