K00435

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00435

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: K00435

Determination of introduced cDNA(s)

  • J023087B10 - Rice Full-length cDNAs - Original: J023087B10

    full reading [+] show sequence

    Nucleotide sequence: J023087B10 - full reading 
    TTAAGGTCTT CTTTTGCAAG TATAATGACC CAATATATGT TAAGATGGAA 
    AAGCTGGAGA TTATGATAAA GCTTGCCTCT GACAGAAACA TAGATCAGGT 
    TCTATTGGAA TTCAAAGAGT ATGCCACAGA GGTGGATGTT GACTTTGTCC 
    GCAAAGCTGT TCGTGCTATT GGAAGATGTG CAATTAAGTT GGAGAGAGCT 
    GCTGAAAGGT GTATCAGTGT TTTGCTTGAG CTGATTAAGA TAAAGGTTAA 
    TTATGTTGTG CAGGAGGCTA TAATTGTTAT TAAGGACATC TTCAGGCGCT 
    ACCCTAATAC GTATGAGTCG ATCATCGCAA CACTCTGTGA AAGCCTAGAC 
    ACCTTAGATG AACCAGAGGC TAAGGCATCA ATGATTTGGA TTATTGGAGA 
    ATATGCTGAA AGGATTGACA ATGCTGACGA ACTTCTTGAG AGCTTCTTGG 
    AAACATTCCC AGAAGAACCA GCATTAGTTC AATTGCAGTT ACTAACGGCA 
    ACTGTTAAGT TGTTCCTTAA AAAGCCAACT GAGGGGCCTC AACAGATGAT 
    ACAGGCTGTT CTCAATAATG CAACAGTTGA AACAGACAAT CCTGATTTGC 
    GCGACCGAGC TTATATATAC TGGCGACTTC TTTCTACTGA TCCTGAGGCA 
    GCTAAAGATG TAGTTTTGGC AGAGAAACCT GTGATCAGCG ATGATTCCAA 
    CCAGCTTGAT TCTTCTCTCC TAGATGATCT GCTAGCCAAT ATTTCTACCC 
    TTTCATCAGT TTATCACAAG CCTCCAGAAG CATTTGTTAG CCGCGTTAAA 
    ACAGCTCCTA GGGCTGATGA TGAGGAGTTT GCTGATACAG CTGAAACAGG 
    ATATTCGGAG TCACCATCTC AGGGTGTTGA TGGGGCATCA CCTTCCTCTA 
    GTGCTGGCAC TTCTTCTAAT GTTCCAGTGA AGCAGCCAGC AGCACCAGCT 
    GCTCCTGCTC CAATGCCAGA CCTCCTTGGT GATTTGATGG GTATGGATAA 
    CTCCATTGTT CCTGTTGATG AACCAACAGC ACCTTCAGGC CCTCCACTAC 
    CTGTTTTGTT GCCATCAACC ACTGGCCAAG GACTGCAGAT CAGCGCACAA 
    CTAGTGCGGC GTGATGGCCA AATATTCTAT GATATATCTT TTGATAATGG 
    CACTCAAACT GTGCTAGATG GATTCATGAT TCAGTTTAAC AAAAATACCT 
    TTGGCCTTGC AGCCGGTGGT GCACTTCAGG TCTCTCCACT GCAACCTGGG 
    ACCTCGGCCA GGACGCTGCT ACCTATGGTG GCATTCCAGA ATCTCTCTCC 
    TGGAGCGCCA AGCTCACTGC TGCAGGTTGC GGTGAAGAAT AATCAGCAAC 
    CTGTGTGGTA CTTCAATGAC AAAATCCCTA TGCATGCCTT CTTTGGTGAA 
    GATGGCAAAA TGGAACGAAC AAGTTTTCTT GAGGCCTGGA AATCTTTACC 
    TGATGACAAC GAATTTTCGA AAGAGTTCCC CTCTTCTGTC GTCAGCAGCA 
    TAGATGCGAC CGTTGAGCAC CTTGCAGCAT CAAATGTGTT CTTTATCGCC 
    AAGAGGAAAA ACTCAAACAA GGATGTTCTG TACATGTCTG CAAAGATTCC 
    GCGTGGAATC CCCTTCCTGA TAGAGCTTAC TGCTGCAGTC GGTGTTCCTG 
    GCGTGAAGTG TGCGGTCAAA ACTCCAAACA AGGAGATGGT GGCTCTCTTC 
    TTCGAAGCCA TGGAGTCTCT TCTCAAGTGA TACAAAATTG AAGGATCATT 
    GTTCCTTCCA AATTGATCAG TTCATGAGCT ATTGTAGGTT TGGATGCGGC 
    GTTGTTTCAC AGGAGCTGGT GTGAATTGTA TTTGTTGTTC TTTGTATTAG 
    ATTACTGTAT TTAAACTGCT AGTTTCCTGG TTTCAAAGTT TTTTCACGAC 
    GAGC

    Gene models with high sequence identity

    1. AT4G11380.2 [+] show detail - Adaptin family protein
      E-value: 0; Score: 816.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 3.1e-56
    superfamily Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain 3.1e-37
    superfamily Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain 2.7e-35
    HMMSmart Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain 0.0000019
    HMMPanther ADAPTER-RELATED PROTEIN COMPLEX 1, BETA SUBUN 1.4e-270
    HMMPanther ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT 1.4e-270
    Gene3D Armadillo-like helical 3.4e-84
    Gene3D Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain 1.8e-31
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 3.5e-30
    HMMPfam Clathrin/coatomer adaptor, adaptin-like, N-terminal 2.6e-66
    HMMPfam Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain 4e-31
    HMMPfam Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain 0.000000073

    See the detailed result >

    AT4G11380.2

    Model type
    Protein coding
    Short Description
    Adaptin family protein
    Computational Description
    Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).
    Link
    InterPro Scan - TAIR

  • J013024O19 - Rice Full-length cDNAs - Original: J013024O19

    full reading [+] show sequence

    Nucleotide sequence: J013024O19 - full reading 
    GGAGGAACAC AAACCAGAGA TCCAAAAGAA TCCGTCGAGG CCACAGATTG 
    TTCCAGAGTT TTTGTTTTCC TCTTCTCCCC TTCGCGTTAG CGAGCATGTG 
    TCCCGGAGGC AGATACGCGG GCCTCGACGT CCCCGCCTGC GCGGCGGCGG 
    GAGACCTGAG GCCGGCGTTC GACGTGCTGG ACGCGGACCG CGACGGTCGC 
    ATCAGCCGGG AGGACCTCAA GTCGTTCTAC GCCAGCGGCG CGGCCACCAG 
    CGAGCGGTTC GACGACGAGG ACATCGCCGC CATGATCGCC GCAGCCGACG 
    TGGACAACGA CGGGTTCGTG CAGTACGACG AGTTCGAGCG CCTGCTGGGG 
    CGCGCCGCCG CGGGGGCGGG GTGCCGGCCC GCGATGGAGG ACGTGCTCCG 
    GGTGATGGAC CGCGACGGGG ACGGCAAGGT GGGGTTCGAC GACCTCAAGG 
    CGTACCTCGG CTGGGCCGGG ATGCCGGCGG CCGACGAGGA GATCCGCGCC 
    ATGATACGCG TGGCCGGCGG CGGCGACGGC GATGGTTGCG TGGGGCTCGA 
    GGAGCTCGCC ATCGTCCTCG GCTGCTCGCC CACAAATTGG ACCGCATCTT 
    CTCAAACTCT GCATTGATGC ATTGATTGGG AGACTTCAAT TTGTTGGTTG 
    GTGGTGTTGT GGTGATGTGA TTGTTGAGCG ATTTTCGAGT TTCGAGAAGC 
    GTGAGGGATG TTTAATTGGG CGTAACTGCT CCCGAAAATA GGGGTATTAA 
    AAACTCCCCG ATGCAGCTTC TTCCATAGAA AAAAGTTGAA AAGTTTGTAT 
    TGAAGCTGAG CATCGATGGT GTGAGTTGGG GGTAGGTTTT ATTTGGAACT 
    AATGAGATGT TTCTTTTCTC AATCCTTTTT TAAGCAAGTT TCTTTTTCAA 
    TCTGAACCGA AAATTTGTGT AAGATCCTCG AAAAAGAGGA GG

    Gene models with high sequence identity

    1. AT5G49480.1 [+] show detail - Ca2+-binding protein 1
      E-value: 5e-21; Score: 98.60

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    ProfileScan EF-HAND 2 10.106
    ProfileScan EF-HAND 2 11.696
    ProfileScan EF-HAND 2 11.194
    ProfileScan EF-HAND 2 6.061
    superfamily EF-hand 4.8e-26
    HMMPanther MYOSIN LIGHT CHAIN\CALMODULIN 9 2.3e-45
    HMMPanther CALMODULIN 2.3e-45
    Gene3D EF-hand-like domain 4.7e-22
    HMMSmart Calcium-binding EF-hand 0.02
    HMMSmart Calcium-binding EF-hand 0.011
    HMMSmart Calcium-binding EF-hand 1.5
    HMMSmart Calcium-binding EF-hand 75

    See the detailed result >

    AT5G49480.1

    Model type
    Protein coding
    Short Description
    Ca2+-binding protein 1
    Curator Summary
    AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
    Computational Description
    Ca2+-binding protein 1 (CP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR