K00436

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00436

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00436

Determination of introduced cDNA(s)

  • J013106I02 - Rice Full-length cDNAs - Original: J013106I02

    full reading [+] show sequence

    Nucleotide sequence: J013106I02 - full reading 
    GAACCAAACC CGCGAAACCC CCACAAACGA CGGTGGTGAA AGAAGATGAG 
    AGGGCTACTC GCGTGCGCCA CGCTCGCCCG CCGCGCCGCC GGCGCGACGT 
    CGACGGCGCG GCGGCACCTG GCGGGCGCGG CCGAGGCGGC GGAGGCGGAG 
    CTGAAGAAGA CGGCGCTGTA CGACTTCCAC GTCGCGCACG GCGGGAAGAT 
    GGTGCCGTTC GCCGGGTGGA GCATGCCCAT CCAGTACAAG GACACCATCA 
    TGGACTCCAC CCTCAACTGC CGCGCCAACG GCAGCCTCTT CGACGTCTCC 
    CACATGTGCG GCCTCAGCCT CCACGGCCGC CAGGCCATCC CCTTCCTCGA 
    GTCCCTCGTC GTCGCCGACG TCGCGGCGCT CAAGGACGGC ACCGGGACGC 
    TCACCGTCTT CACCAACGAC CGCGGCGGCG CCATCGACGA CTCCGTCGTT 
    ACCAAGGTCA CCGACCAGCA CATCTACCTC GTCGTCAACG CCGGGTGCAG 
    GGACAAGGAT CTCGCCCACA TTGGGGAGCA CATGGAGGCC TTCAACAAGA 
    AGGGCGGCGA CGTCAAGTGG CACGTCCACG ATGAGCGCTC GCTTCTTGCA 
    TTGCAGGGAC CTCTTGCTGC ACCAACTCTC CAGTTGCTGA CAAAAGAAGA 
    TTTAAGCAAA ATGTATTTCA GTGACTTCAA GATGATTGAC ATCAATGGAT 
    ATGCTTGCTT TCTCACCAGA ACTGGTTATA CCGGTGAAGA TGGGTTTGAA 
    ATCTCTGTTC CATCAGAGAA TGCAGTTGAT CTTGCAAAGG CCCTCCTGGA 
    GAAATCTGAA GGCAAGGTGA GACTGACTGG TTTAGGTGCC CGTGACAGTC 
    TCCGCTTGGA GGCTGGCCTC TGCCTGTACG GCAACGACAT GGAGCAACAC 
    ATCACACCAG TTGAGGCTGG TCTCTCATGG GCAATTGGCA AGAGGAGGAA 
    AGCAGAAGGC GGCTTCCTGG GAGCAGATGT GATCCTCAAG CAGCTCCAGG 
    AAGGCCCAAA GATCAGGCGT GTCGGTCTCC TCTCGCAAGG ACCGCCTCCT 
    CGGAGTCATA GTGAGATTGT GAGCAACTCC GGGGAGAACA TTGGTGAGGT 
    TACCAGTGGA GGGTTCAGCC CCTGCTTGAA GAAGAACATC GCCATGGGCT 
    ACGTAAAATC CGGTTTGCAC AAGGCTGGGA CAGAGTTCAA GGTTGTCGTC 
    CGTGGGAAGT CCTACGATGC CGTCGTCACC AAGATGCCGT TCGTGCCGAC 
    CAAGTACTAC AAACCCTCAT GGATTTGTAC AAAGGATGCT CCTTCGGTTG 
    AAATTTTCTC ATGCAACTCT CTTGTCGCTG CTTGTTCTGC AGCACCGCAA 
    CTGTAACTTC TGTAAGGTCT CATCTTACAG CCTGACATTT TACCTCTGCC 
    CATCTAATAA TATGAAATGT GATATGCAGC

    Gene models with high sequence identity

    1. AT1G11860.3 [+] show detail - Glycine cleavage T-protein family
      E-value: 1e-179; Score: 626.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Aminomethyltransferase folate-binding domain 1.3e-83
    superfamily Aminomethyltransferase beta-barrel domain 9.5e-31
    HMMPfam Glycine cleavage T-protein, N-terminal 1.1e-64
    HMMPfam Glycine cleavage T-protein, C-terminal barrel 1.3e-24
    HMMPIR Glycine cleavage system T protein 5e-115
    HMMPanther AMINOMETHYLTRANSFERASE 9.8e-207
    HMMPanther FAD NAD BINDING OXIDOREDUCTASES 9.8e-207
    HMMTigr Glycine cleavage system T protein 8e-123

    See the detailed result >

    AT1G11860.3

    Model type
    Protein coding
    Short Description
    Glycine cleavage T-protein family
    Computational Description
    Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3).
    Link
    InterPro Scan - TAIR