K00438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00438

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00438

Determination of introduced cDNA(s)

  • J013041D01 - Rice Full-length cDNAs - Original: J013041D01

    full reading [+] show sequence

    Nucleotide sequence: J013041D01 - full reading 
    CGGGTAGATC GACGCTGGTG TAGCTATTGC TAACATTATT GACCAGAGCA 
    TTAGCTAGCG AGCCCAATAA ATTTGGTAGC TAATACCGCC TATTCCGCCA 
    CGTACCGACG CCCGTTCCCG CAGATGGCAC CACCCTCGCA CTGCCACACC 
    ATCAATGGCG GTGCCCCACG GAATGGTGCC ATCCCGGAGG TGGAGACGAC 
    GACGTCGACG CCGGCGGCGT CAGATACCGC GCTACTGCTC GACGCTGACG 
    AGTTCCGGCG GCTCGGCCAC CAGGTCGTCG ACTTCATCGC CGACTACTAC 
    GCCGGCCTGG GCGACTACCC CGTCCACCCA AGCGTCACTC CCGGCTTCCT 
    GCGCCGCCAG CTCCCCGCCG ACGCGCCGTC CCGCCCGGAG CCCGAGGCGT 
    TTGCGGCGGC GCTGCGGGAT GTCCGCGACC TCATCCTGCC TGGCGTGACG 
    CACTGGCAGA GCCCTCGCCA CTTCGCGCAC TTCCCGGCGT CGAGCAGCAC 
    CGTCGGCGCC CTCGGCGAGG CGCTCGCGGC CGGCATCAAC GTCGTGCCTT 
    TCACGTGGGC GGCCTCGCCG GCCGCCACCG AGCTCGAGAT GGTGGTCGTG 
    GACTGGCTCG GCAGGGCGCT GCACCTGCCG GAGAGCCTTC TGTTCGCCGG 
    CGGAGGCGGC GGCACGATCC TGGGCACGTC GTGCGAGGCC GTCCTCTGCG 
    CGCTCGTCGC CGCGAGGGAC CGGAAGCTGG CGGAGATCGG CGCGAGGAGG 
    ATCGGCGACC TCGTCGTCTA CTGCTCCGAT CAGACCCACT TCGCGTTCCG 
    CAAGGCCGCG CGCATCGCCG GGATACCGCG GGAGCACTGC CGCGAGATAC 
    CGACGTGCCG CGACGACGTG TTCGCGCTCT CGCCGACCGC GCTGCATGCC 
    GCCATGCAGG CCGACGTCGA CGCCGGGCTG GTCCCCTTGT TCCTGTGCGC 
    CACGGTGGGC ACCACCCAGA CTACCGCCGT GGACCCCGTC CGCGAGCTCT 
    GCGCCGTCGC GGCGCGCCAC GGCGGCGTGT GGGTGCACGT GGACGCGGCG 
    TACGCCGGGT CGGCGCTGGT GTGCCCGGAG TTCCGCGACG TGATCGCCGG 
    CGCCGAGGCC GTCGACTCGC TCAGCATGAA CGCCCACAAG TGGCTCCTCG 
    CCAACAACGA CTGCTGCGCG GTGTGGGTGG CGGCGCCGTC GGCGCTGGTG 
    GCGGCGCTGG GCACGGAGCA GGAGTACATC CTCAGGGACG CGGCGGCGGA 
    GGGCCACGAC GTCGTCGACT ACAAGGACTG GGGCACCACG CTGACGCGGC 
    GGTTCCGCGC GCTCAAGGTG TGGCTCGTGC TCCGCTGCTA CGGCGTGGAG 
    GGCCTCCGCT CCCACGTCCG CTCCCACGTC GCCATGGCCG CGGCGTTCGA 
    GGCCATGGTG AGGGGCGACG CGAGGTTCGA GGTGGTGGCG CCGAGGCGGT 
    TCGCGCTGGT GTGCTTCCGC CTCCGGTCGC CGCCGGAGAG ACTCGGCGTC 
    GGCGTCGGCG TCGGAGGCGA GAAGGCGGCA AACGAGCTCA ACAGGAGGCT 
    CCTGGAGGAG GTGAACGCGG CGAGCTCGGG GCCGTACATG AGCTCCGCCA 
    TGGTGGGTGG CGTGTACATG CTCAGGTGCG CCATCGGGAG CACGCTCACC 
    GAGGAGCGCC ATGTCCGCGA AGCGTGGAAG GTTGTCCAGG AGCGGGCCAC 
    GTCAATCCTT CGTAAACGTG GCTAAAACAT CTCGGTAGGT TTGATCCAAA 
    TTAAGCATGG TTTTCTCCAA GCAGATTGAT AAACTATGCT TTTCGGATTG 
    ACACGGCAAA ATAATCCTGC TGCGTATTAT ATTCTTCACT TAATCTCTTG 
    ACTAAATTAG TAGAGAGATT AATTGTGTTG CATTATTTAA AAAAAGAATT 
    ATAGAATAAT TTATAAATAA GT

    Gene models with high sequence identity

    1. AT2G20340.1 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
      E-value: 8e-135; Score: 478.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyridoxal phosphate-dependent transferase, major domain 2.8e-131
    Gene3D no description 2.7e-28
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.5e-86
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 1.3e-27
    HMMPanther AROMATIC AMINO ACID DECARBOXYLASE 6.3e-102
    HMMPanther Pyridoxal phosphate-dependent decarboxylase 6.3e-102
    FPrintScan Aromatic-L-amino-acid decarboxylase 2e-61
    FPrintScan Aromatic-L-amino-acid decarboxylase 2e-61
    FPrintScan Aromatic-L-amino-acid decarboxylase 2e-61
    FPrintScan Aromatic-L-amino-acid decarboxylase 2e-61
    FPrintScan Aromatic-L-amino-acid decarboxylase 2e-61
    FPrintScan Aromatic-L-amino-acid decarboxylase 2e-61
    FPrintScan Aromatic-L-amino-acid decarboxylase 2e-61
    FPrintScan Aromatic-L-amino-acid decarboxylase 2e-61
    HMMPfam Pyridoxal phosphate-dependent decarboxylase 1.1e-122

    See the detailed result >

    AT2G20340.1

    Model type
    Protein coding
    Short Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Computational Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: response to wounding, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: L-tyrosine decarboxylase (TAIR:AT4G28680.1); Has 5452 Blast hits to 5431 proteins in 1792 species: Archae - 99; Bacteria - 1888; Metazoa - 2300; Fungi - 264; Plants - 262; Viruses - 5; Other Eukaryotes - 634 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR