K00442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00442

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00442

Determination of introduced cDNA(s)

  • J013075I09 - Rice Full-length cDNAs - Original: J013075I09

    full reading [+] show sequence

    Nucleotide sequence: J013075I09 - full reading 
    GACACCACAA AAAACCAACC CAACCGCCGC CGCATCGCCC TCGTTAGAAC 
    GATGGCCGCG TCGGCGCTGC ACCAGACCAC CAGCTTCCTC GGCACCGCCC 
    CTCGCCGGGA TGAGCTCGTC CGCCGCGTCG GCGACTCCGG TGGCCGCATC 
    ACCATGCGCC GCACCGTCAA GAGCGCGCCC CAGAGCATCT GGTATGGACC 
    TGACCGTCCC AAGTACCTGG GCCCGTTCTC GGAGCAGACG CCATCGTACC 
    TGACCGGAGA GTTCCCGGGA GACTACAGGT GGGACACGGC GGGGCTATCG 
    GCCGACCCGG AGACGTTCGC GAGGAACAGG GAGCTGGAGG TGATCCACTC 
    GCGGTGGGCG ATGCTGGGGG CGCTGGGCTG CGTCTTCCCG GAGATCCTGT 
    CCAAGAACGG GGTGAAGTTC GGGGAGGCGG TGTGGTTCAA GGCCGGCGCG 
    CAGATCTTCT CCGAGGGGGG GCTCGACTAC CTGGGGAACC CCAACCTGGT 
    GCACGCGCAG AGCATCCTCG CCATCTGGGC GGTCCAGGTG GTGCTCATGG 
    GATTCGTCGA GGGCTACCGC GTCGGCGGCG GCCCGCTCGG CGAGGGCCTC 
    GACAAGGTGT ACCCAGGCGG CGCCTTCGAC CCGCTCGGCC TCGCCGACGA 
    CCCTGACACC TTCGCCGAGC TCAAGGTGAA GGAGCTCAAG AACGGCCGCC 
    TCGCCATGTT CTCCATGTTC GGCTTCTTCG TCCAGGCCAT CGTCACCGGC 
    AAGGGCCCCA TCGAGAACCT CTTCGACCAC GTCGCCGACC CCGTCGCCAA 
    CAACGCCTGG GCATACGCCA CCAACTTCGT CCCCGGCAAG TGAGCACAAC 
    GACACGATCG AGATGGTGCC AACCAACGTA CCATGTGTAC ACTTGTAGTA 
    GCCACGCACC GACCCTGCAG TTGCAGTTGC AGCAGTGCAT GTATGTATGT 
    ACCTTAATTG TGTGTGTGTG TGTGATCGAT CGAGGAGATT TCTAGCTTAA 
    TTAATTTCTG TCTGTCATCA TCTTTGCTTC TTTGGATCGA GATTTAATGT 
    AAGCCGCAGG CCGCATCCAA GGGATGATCG AATTAATGAT GTATCGTTAT 
    TATAGG

    Gene models with high sequence identity

    1. AT2G05100.1 [+] show detail - photosystem II light harvesting complex gene 2.1
      E-value: 6e-133; Score: 470.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Chlorophyll a-b binding protein 1.3e-81
    HMMPanther Chlorophyll A-B binding protein 8.3e-188
    HMMPfam Chloroa_b-bind 8.6e-50

    See the detailed result >

    AT2G05100.1

    Model type
    Protein coding
    Short Description
    photosystem II light harvesting complex gene 2.1
    Curator Summary
    Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.
    Computational Description
    photosystem II light harvesting complex gene 2.1 (LHCB2.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to salt stress, response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.2 (TAIR:AT2G05070.1); Has 2375 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2059; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR