K00517

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00517

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00517

Determination of introduced cDNA(s)

J023092O22 - Rice Full-length cDNAs - Original: J023092O22

full reading [+] show sequence

GTTCGTCCCC CACCCCGCTG AGCCATCATT TCTCTCAAAT TTCTCCTCCT 
CCAATCCAAG GCCCCAAGGA ATTGAAGGAT GATGCTGCTC GCCAAGGAGT 
TGGGCCTGTC GCCGCCGGCA GCGGTCACTC CTCACCGGAG GCCGCCGCCT 
GCCAGGGTCC CCGCCTCTCC CTCCGGTGGC TCGCCCGTGG CCGTCGGAGA 
CCTCTGGCTC CGGACCAAAG GAGCCGGAGG AGGAGGAGAC GGGTTCGGGA 
GCCACAGCCA CGAGAGCGAG ATGGATTTGG CCATGCTCGT CACCGACTTC 
CTTGAGAACG GCGGCACCGG AGGCGCCGAT TCCCGCGCCA GCAGCGACTC 
CGACTCCGCC CTCTCCGACC ACCTCGCCGA TAACATTTCT ATCTACAAGC 
AAGGCGGCGA TGAGAAAGAA AACGAGCTAC TCTCCATGGT CCACTCGCTG 
TTATTCTCGA TCCATGAGTC AGACCTTCTG GCTTTCAAAA GAGGTCAATG 
CAGTGCCAGC TGCATCCGTC ATTTACTTGT GAAGCTCTTG AGATATTCGG 
GATATGATGC AGCTGTTTGC GTATCAAAAT GGCAGGGATT CGACAAGATA 
CCTGGAGGTG ATCATGAGTA TATCGATGTC ATCATGAATA GTGATACTGA 
ATATCGTCTG ATCATTGATA TCGACTTCAG GAGCCACTTT GAAATAGCCA 
GGGCTGTTGA TTCTTATGAC AGTCTGCTCA ATTCACTTCC GGTGGTCTAT 
GTTGGCACTC TTCCCAGACT GAAACAGTTC TTGCATGTTA TGGTAGATGC 
TGCAAAATGG TCGCTTAAGC AGAACTCTAT GCCTCTGCCT CCTTGGAGAT 
CCTTGCCTTA TCTCCAAGCA AAATGGCATT CCAAGTATGA GAGGATAGAC 
CTGCACATTG AGCAAGACTT CCACAGCACA GCTTCAGATC ACGCACTATG 
CATTGGGCAC CTCAAAAGGC TGAAATCCTC CCTGCAGTCA GAACTGGATA 
CCGAAAGGTT GCTTATGATG CCAATCAAGA CTGATATGAA GCGGAGGGCA 
AAGTTTGAGA GGCGGCGGCG CCGTTCCTTG CTCAGCTTCT GATTCATATT 
TGTGCTTCTT GGATACTGAA GTACTGAGAG AAGGAAGAAT AGCTTCCCAT 
ACTTTTTTCT GTGATAAAAG GAGTTCTTTT TAACAGTTTT GGACATACAA 
GGGAAATAGA TGACGGGTAC TAACAAGGCA GGAGAGTTGA GAGAGTGTGC 
CAGCTTTTTT TTGAAGGCAT ATACAAAAAC ATAAAATTCT TTTTGGATTT 
CATTTTTGTT CTTCCGGCGA TGATGGCTGC TAGTGGTTAA TCTGCTGCAT 
ACCATGTACA ATGATGAGTG TTTACAGCGT TTTTTTCCTC CTTATATTCA 
TTCTTTTATC ACATAGATGG ACCTTGTGTA TTTTGAACAC ACTTCCTTTT 
CCCCCTTGTT GTAGAGTGGA CATGATACAT GCTGTTGGTT CCCTTTGTAA 
TAATAGAATG TTCAAGCTTA GTTACACTCT GTTTTGAAAT GATATACTCT 
AAAATGTTCT GGCC

Gene models with high sequence identity

AT2G39650.1 [+] show detail - Protein of unknown function (DUF506)
E-value: 1e-67; Score: 254.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Protein of unknown function DUF506, plant	7.7e-71
HMMPfam	Protein of unknown function DUF506, plant	1.4e-60

See the detailed result >

AT2G39650.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF506)
Computational Description: Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT2G38820.2); Has 395 Blast hits to 393 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR