K00537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00537

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00537

Determination of introduced cDNA(s)

  • J023003K14 - Rice Full-length cDNAs - Original: J023003K14

    full reading [+] show sequence

    Nucleotide sequence: J023003K14 - full reading 
    GGGAGTCAGA TTGCGCGCGC CGTCCTCCCC CACCGCCATG GCGCCGCCGT 
    CACGGCATGT GGACGCGGTC GCCGCCGTTC TCCCTGTCCT CCTCACGATC 
    CTTCTGCCTT CCGCCGCCGC AATCGGCGTC AACTACGGCA CCAAGGGAGA 
    CAACCTGCCG CCGCCGGCCA CCGTGGCGAA GTTCCTCGCG AACCGCACCC 
    GCATCGACCG GGTGAAGCTG TTCGACACCA ACCCGGACAT CGTCAAGGCC 
    TTCGCCGGCA CGGGCATCAC GGTCATGGTC ACCGCCGGAA ACGGCGACAT 
    CCCGACGCTG GGCACCAAGG ACGGCGCCGC CGCCTGGGTG GCGGCGAACA 
    TCGCGCCGTA CTACCCGGCG ACGGACATCT CCCTCGTGGC CGTCGGCAAC 
    GAGATCATCA ACACGGCGGA CAACGCCCTC ATCGGCGGCC TCGTCCCGGC 
    CATGCGCACC CTCAGGGCGG CGCTCGTCGC CGCCGGCTTC CGGCGCATCC 
    GCGTCTCGAC GCCGCACTCC CTCGGCATCC TGTCCGTCTC CTCGCCACCG 
    TCGGCGAGCC GGTTCCTCGA CGTCCTCGAC CGCACCTTCT TCGCGCCGAT 
    GCTGGAGTTC CTCCGCAAGA CCAAGTCTCC GTTCGTCGTC AACCCGTACC 
    CCTACTTCGG CTACAACGGC GACACGATCC CGTACGCGCT GGCGCGGCGC 
    CCCAACCCCG GCGTGCTCGA CCCGGGCACG GGCATCACCT ACACCAGCAT 
    GCTCGAGGCG CAGCTGGACT CGGTGTTCTC GGCGATGAAG AAGCTGGGGT 
    TCGAGGACGT GGACATCACG GTGGGGGAGA CCGGGTGGCC GACCAAGGCG 
    GAGCCCGGAC AAGCCGGCGT GAGCGTCGCC GAGGCGGCGG AGTACAACCG 
    CTACCTCATC GGAGAGGCCA GCTCGGGGTC GGGGACGCCG CTCATGCCGA 
    AGCGGACGTT CGAGACCTAC ATCTTCGCGC TCTTCAACGA GAACCTCAAG 
    CCGGGTCCCA TCGCCGAGCG CAACTTCGGC CTCTTCAAGC CCGACCTCAC 
    GCCCATGTAC GACGTCGGCC TCATGAAAGA CACGGGGAAG TCATCAGCGT 
    CGGCGCCGGC GCCGGCGAAG GGCGGCAATG CCAGCGGCGC CGCCGTGACG 
    AAGCGTGACT CGGAGTCGGA GGCCGCCGCG CCGGCTGATG AGGCGAGTGC 
    GCCCGCGCCG TCGTCGGTGG GGAAGAAGGT CTCCACGAAG GCCACCGCGC 
    CGGCACCGTC GGACGACGGC TCGGCCTCGC CGGAGCCATC GGAGGGCGAA 
    TCGGCCGACG AGAAGAATCC GGAGGAGGAG GAGGAGGAAG AGGGGGATGA 
    TGCCGCCGCG ACGACGACGC CGGGGGGCGA CGGCGACTCG CCGGAGACGG 
    AAGCCGCGGG TGATGATGCT AAAGAGAGCG AGGGAAAAAA CAACCCCCAT 
    GGCCATGGAG ATTCTTCAGA AGCTATCAGT GTTATGTTCT CTGTACCTTC 
    CATGCTTACA ATTGCTCTGT CTGCAATACT TCTTCATCTC TAACTTCTCC 
    TCAACTCATG GTGTAACAAT AGTGCAAATA CTAACATTGG TTTTTGCC

    Gene models with high sequence identity

    1. AT5G24318.2 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 4e-105; Score: 379.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 17 1.7e-79
    FPrintScan PRICHEXTENSN 0.0000000049
    FPrintScan PRICHEXTENSN 0.0000000049
    FPrintScan PRICHEXTENSN 0.0000000049
    FPrintScan PRICHEXTENSN 0.0000000049
    FPrintScan PRICHEXTENSN 0.0000000049
    Gene3D Glycoside hydrolase, subgroup, catalytic core 2.5e-96
    superfamily Glycoside hydrolase, catalytic core 3.9e-90

    See the detailed result >

    AT5G24318.2

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G55430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR