K00541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00541

Determination of introduced cDNA(s)

J023002J24 - Rice Full-length cDNAs - Original: J023002J24

full reading [+] show sequence

GTCCGATCCC CATCTATCCC GCGAGCGAGC ACGGGGCGCC GTCGTTCGCC 
CTGCCGCATC AGTTTGGGGG TTCAACTGAA CCACCATGTC CTATGTTAGA 
TCCGCCTGAA TTTTCGGGAG AAGCTTACTT GATTGAGAGA TGTCACTTGG 
CTATGCCGAG AAGCTATCCT ACCGAGAGGA TGTGGGAAAT GTCGGCATGC 
CTGAGATCTT CGACTCTCCT GAACTCCTCC ACAAGAAGAT AGAAGAGCTT 
GCAGTCATGG TGCGAGAGAG TAAGCATTTG GTGGTGTTTA CTGGAGCAGG 
CATATCAACT TCATCAGGCA TACCTGACTT CCGAGGGCCC AAAGGCGTGT 
GGACACTGCA GCGTTCAGGA AAAGGTGTTC CTGGTGCATC ACTGCCGTTT 
CACCGAGCTG TTCCAACCTT GACTCATATG GCACTGGTTG AATTGGAAAA 
AACAGGACGA TTAAAGTTTG TCATAAGCCA GAATGTTGAT AGCTTACATC 
TCCGCTCTGG CCTCCCAAGG GAGAAGCTGG CTGAATTGCA TGGAAATTCT 
TTCAAGGAGA TCTGCCCAAG CTGTAAAAAG GAGTACCTTC GTGATTTTGA 
AATTGAGACG ATAGGACTGA AGGATACTCC AAGGCGTTGT TCTGATAAGA 
ACTGTGGAGC TAGATTAAAA GACACAGTTC TTGATTGGGA GGATGCTTTA 
CCCCCTGAGG AGATGGATGC TGCCAAGGAG CAGTGTCAAA AAGCTGATCT 
TGTCCTATGT TTAGGAACTA GTCTGCAGAT TACTCCTGCT TGTAATATGC 
CTCTGTTGTC ACTGAAGAAT GGGGGGAGGG TGGCTATTGT AAATCTTCAG 
GCAACTCCGA AGGATAAAAA GGCAAGCCTT GTCATTCATG GACTTGTGGA 
TAAGGTCATT GCTGGGGTTA TGTATATGAT GAATCTGCGT ATCCCTCCAT 
ATATTCGTAC TGACTTTGTT CAAATTAGTC TCCGGAACTC GGTCAAAAAA 
AAAATGCGTG AGATGGACTC TCCGAGTAAC AAGCATTCAT GGCTTGCGAG 
CACCTTTGCC ATTTCTTCGA TCAGTTGAGG TTTCCTTTCC TGAAAGACCT 
GACATGAAGC CTGTAGTACT AAAGGAGCAA CCATTTTCTT TGCAGAGAGA 
AACATCAATG AATAGACCGT TTGTCATGCT ATTGACATTC AACTTTAGTG 
ATGGTTGCGG CTGTTCGAGC TCTTCCATTG AATGGCCTGT TGATTTTCTG 
AAGCAAAAAG ACAGCTTTGT CAGGGATAGA AGTCTAGTCC TGCAAGAGTT 
GCAACATGCT GCAGAGCATC GATCACGTGC AGGGCAGCAT GCAATTCTGG 
AGAGGGAGGG TGTGCCAAGA GCTGAAACGT CAATTCATGC ACTTGTGACC 
AACATCGTCA GGTATGATAC TGAAGATAGC AAGGCGGCAG TTCCCATGGC 
TACATGGATG AACAGCAACG GCAGCCTTTC GAAACGGCAT ATGGATGCCA 
TTGGTTGCAA CCCAGCATCG TCAAAAAAGC AGAAGTTGGT TGCTACTCGT 
CATCGGCGAA AGGGCTTGAA CCCTGCTACT CAGAAAGTTT GATGGCTGTT 
TGTTCTAGTT GTCAGACTAG AGTTAGGATA GATGCATGAG ATGTTCACAG 
TAGCTAGAGT AAGGTGTTAA CAACTTCTAG TGCATGTGAA AGCTGGTAGA 
ATTTTAACTT GACAAGCCCA ACGTAATTCA GCAACCATCT CAAAAGAAAC 
TGGTTGTGGG GCTTGATGGT ATGTTTTGTA AAGCTCGGGA AGATGAACAA 
ACCTCTAAAT CATTAAGGAT GATCTGAGGA ACTGGAGGTA AAGTGAACCG 
TACAAAGAAA ATAAATGGAA GGCGAGACAA TTTTTTATTG CTGC

Gene models with high sequence identity

AT5G55760.1 [+] show detail - sirtuin 1
E-value: 3e-124; Score: 442.00

InterPro Scan Digest

Program	Description	E-value
HAMAP	NPD_MF_01121	25.972
HMMPfam	NAD-dependent histone deacetylase, silent information regulator Sir2	0.00003
HMMPfam	NAD-dependent histone deacetylase, silent information regulator Sir2	6.4e-23
superfamily	DHS-like NAD/FAD-binding domain	3.7e-73
Gene3D	no description	7e-42
HMMPanther	NAD-dependent histone deacetylase, silent information regulator Sir2	4.6e-75
ProfileScan	NAD-dependent histone deacetylase, silent information regulator Sir2	43.899

See the detailed result >

AT5G55760.1

Model type: Protein coding
Short Description: sirtuin 1
Curator Summary: Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).
Computational Description: sirtuin 1 (SRT1); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 2 (TAIR:AT5G09230.7); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033068G21 - Rice Full-length cDNAs - Original: J033068G21

full reading [+] show sequence

GAATTTTCTC CCCTCGCGCC GCCGCCGCGT TCACCTCGGT CGTGCCGGCC 
GCCTCCTTCT CGCTCCGCCG CCGCCGCGCT CGCTGCTCTC TCTCCCTCCC 
ATCTCGCCCT TAGTCCGCCG CGTCCGCCTC CTTCTCTCTC CTCGCTGCTC 
TCTCTCTCTC TCTCTCTCTC TCTCTCTCCC ATCTTGCCCT TGCTTGCTGC 
TGGAGCTCGA AGCCCACGCC ATTTTCGCGG CCGCGGGGGA ACCCTAGCCC 
TAGCCGCGCC AGTGCGTGCG TGCGAGCGAG CGCCGCCGAT CCGATCCGAT 
CCGCTTCGCC GCCCTATGTG CCGAGGCCGT TCGAGGTAGG TGTCCCTCCA 
ACTTCTACCT CAGCGCCCCT CTCCGTCGCA TCCAGGGACT CCGCCGCCGC 
CGCCTCCGAT CCCAGCATCC TCGAATCCGA TGGTAAATGC AAGAAGCCAA 
AGGGTAAGCA CAAGGTTGTA CTATTGGGCT TTTCGCGCAT CAAGAGATTT 
CACTCTGTGG CATACCTTCA GCAAATATGG TGCTTTGAAG TGGTTGGAGA 
GATCGATTTC AGCTTCCGTG TGTTAACCTA CAGCTTATAC TTCAGGATTC 
ATCTCGGGAG GTTCTACAAG CGATTTGGAC GCCGAGCTTG CAGCACTGAG 
CATGTCCATG GTTGGGACCA GAAGCCTGTT CGCTTCCAGC TCTCCACCTC 
TGATGGGCAG CACTCATTAT CTCAGTGCTC CCTGGGTGAG CCCGGGAGCT 
GGGTACTTTA CCATGCTGGC AATTTTGTGG TCTCAAAGCC TGACCAAACA 
ATCAAGCTGA AGTTCTCGAT GGCTTAGATT GATTGCACAC ACACAAAAGG 
TGGGTCTTTG TGTCGACTCG GCGTTCATAT ACCCAAAGGG CTTTCAGCAG 
GAGAGGATGG TGAGGTCTCA GAAATGTAGA TGCTGACAAG GAACTTACAT 
TAGATTGTAG ACAAATGCAG CTTGCAGCCT AATTCTATTT TTAATCTGGG 
CTCATGTAGA CAAAGGTGTA TATAATTGTA GGCTTCAATT TTGTGTGATC 
GGTAACATGG ATGTTCTCAT ATAATTAGTG TCTCCTTGAT TGTGC

Gene models with high sequence identity

AT1G12710.1 [+] show detail - phloem protein 2-A12
E-value: 7e-41; Score: 164.00

InterPro Scan Digest

See the detailed result >

AT1G12710.1

Model type: Protein coding
Short Description: phloem protein 2-A12
Curator Summary: This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.
Computational Description: phloem protein 2-A12 (PP2-A12); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: phloem protein 2-A11 (TAIR:AT1G63090.1); Has 458 Blast hits to 452 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 456; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR