K00549

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00549

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00549

Determination of introduced cDNA(s)

  • J023024H07 - Rice Full-length cDNAs - Original: J023024H07

    full reading [+] show sequence

    Nucleotide sequence: J023024H07 - full reading 
    GCTCTCTCTC ATCCTCTCCT TCCCCTCACT TTTTCCTCCC TCTCCCTCCC 
    GTGGCCCCCA TTCTCCTCGC CGGTCGCCGC CGTCCTCCGC GCCACGGCGG 
    ATCGTCGACG ACTGCGGGGG AAGCGTGGAT TCGGCGGCGG TGGAGGAGGG 
    GGAGGCGGCA GCGGAGGGGG CGGCGGTGGA GGAAGAAGCT CCAGATCCAG 
    TGGTTTCGGG CGTCGGGGGC TCCAGATCTG GTGGCGGCGG GCCTCGGAAG 
    CTTCGGCAGG ATCCAGGCAG CTCGTCCACG GCGGGAGCGG CGGCGACCGA 
    GCAGCAACGG AGTGGAGGCG ACGACGTCCT CTGATTGGGA ATTTGCCGCA 
    GTTGGGATTA TTCTTAGGTG CCTGACGGTG AAAATTGTTT TCACAGTCGG 
    TGGTCTATAG TTGCCCGTCT AAATTGGCTG TCAGAATGGT ACTAATTTGT 
    TCTGAAAGTT CTGATGACAA AAACAAGTGC GGAGATGAAT TGATAAACTA 
    TATTTTATCA TGGTCATGGA CAACTTGTAT TGAGTCCAAT TTTGAAAACC 
    CCCAAGAATC AGCTGCATCA TCATATGCAA AATCGCTGTT AGAACCACTT 
    GTCGAGGAAA CGGTAGCAGC AGTTCAGTCA GCTCTCCAGA AGCTGTGTTT 
    TGCACCTCAA TTCAAGATAA TTGATATCCT TCCTGCTGCT GGAGTGAATA 
    TATCATTCTT GGATATAGAT CTTCAGGAGG TTATTACTCA CAACACGGAG 
    AGGGGTGATA TCTTTTTACT GTGCACAGAA CTTCCTAGGG ACTCTAGTCA 
    GCTATGCAAT GATGAAGCAG TACTTGCTAT GGCAACTTGC TCAAATCTTT 
    ATGACACATT TCAGAGAAGT TTCAATGTGA AGACTCATCA GAAAGTTAAG 
    AGACAAAAGT TTAACCATGC TCTGTTCTTG TGCAATATCT TGATGAATAT 
    TCAGATCTGG GAATCACTGA ATGCGGTGAT TCTATATGAC TGCCCAATAA 
    TCAATGATCT ACTGGCGCCA CCATCCATGG TTGTGACATG CTGCAATGAG 
    GAGTTGGTTG ATGTGTTAAT GTCTCAAAAG ATTACTCTAG ATGAGGTGCA 
    GTTGGAAGCT GCCAAAGCAA TTTATTCAGC TGCACGGTGT AAACATAGTA 
    GAAGCATCCA TGTTATATCT GGAGCCCATG GAACAGGCAA AACAAAAATT 
    GTTTTCTCTG CAGTGGCGTC ACTTTTGTCA GTAAGTGAAA AAGTTATTGT 
    ATGTGTCCCC AATGCTCAAT CGTTTTCAGC AATGTGTTCT GATTTTGTTG 
    AAATGGCTGA GTCTCACATG GATGAGGAAT TGGGAATTTG CTTGGGAGAC 
    ATATTGGTAC TATCCAACGA GACCGGGCTA GAAGATAATG TTCAACAGCT 
    TACAATCATT ACAAGAGTCA AAGAAGTGCT GCCTTTGATG ATATGGCATG 
    ATATGATGAA AGCACTAAGG AAATCATTGG CAGCATTTAA AGAGAAATAC 
    GTTGCAGAAT TTAAAGAGAA ATATGTTGCT TCAGCAAAAC ATAATTGTCA 
    GCCATCAGCC AAAAAGTTGC TGACTTCATT ATTTTTCGAA AAGGCAGGTT 
    TTCTGTTGAT ATGCCTTGCA ACCTTTAGGA AACATTTCCC AAAAAATATG 
    TTTTCTGAAC AAGTAAGCAA GAGAATAAAA TCTCTCATCA AGTGTGTCTC 
    CAAACTTGAG AATCTCTTGA AAGACAGGAA TCTCAAGGAA TATGATGTAC 
    ATGTTGCTTT TGGGATATTA TCAGGAAAAA GGGAAACAAT TTCTGTGCTT 
    GCCAAAGATT TACGCCAAAC AAAGAATCAC TGTGTTACTG CTTTGGATGA 
    CCTTCTCACT AGACTTGACC TGCCGTTCAA CAAAGATTGC ATTTGGCTCA 
    GGAATTACTT CATTAGCAAT GCAAAATGTG TGCTATGCAC TCCATTATCA 
    ACATTTGATC TTCAGCTTTC AGCTGGTTCT ATCGAGACAC TTATTGTTGA 
    CAATGCCGAT CAAATAAGAG ATTATGATCT TATTCTTCCT TTAACTCTCC 
    GCGATGTCAA AAATATTGTA TTAACAGGAG ATCCAAGTAA GGTGAAGGAA 
    GGATCATTCT TTCAGAGATT GCTGTCAGTC GGCTTTAGTG TCTTTGAATT 
    GAGAAGGCAA TACAATCTGT TGGATGACAA AGAGAGACAT GAGGCAGATG 
    GGCAAAATAC CCTTTCCGAA GCTTTAAATG ACAAGATAAA GGCTGAAGAG 
    CTGTCCCTTA CAATTGGTTC ACCGAAACAA CTATATTCTG AGTTCACCTG 
    GCTCCATCGT CCTCACAATC AGAAGTACAT CTTACCTCAG TTGTGCGACC 
    AGAAAGGACA TCCTCACTGT ACTGTACATG CTAGTTTAGC GGCTTTGGAA 
    TTCAAGTACA AGTATAAAGC CGCATCAGAA AACCCTCCTC ATGATTTCAG 
    CTCCAAATTC TGTACAAAGC ATATGTTGAA TGTATATGCT GCTAAGTACG 
    GCGAACTAGG AAGTGAGCGT GAAAGTACAA GGGGTAGCAA ACGCCTTTCA 
    AATGTCTTGG ATATATTGCA AAATGATGGA GCCAAGAGAG AAGCAATGAT 
    GGGCAAACAG GTCTATAAAA TCTCTTCATA TGCGTGTACA TACAAAATTG 
    GAAACGATAC TGAGTGTCTT CAAGAAACCA TCGATCATTT GAAGATAGGC 
    GACATTTCAA TTGGATCATT TAAAGTTTCC GAAAATCTCA GGTTTTTTAA 
    GCCCGGAGAA GTGTACATTT ACAACCCAGA AAAGCCAGTA CTCACTCCAA 
    CAGCAAATCA GCCAAGTGCC CACTGCGTGC TGGTAATAGG AGGTGGAGGC 
    TGCCCAAGCG ACAGTACTGC GGAACCTGTC TTAGCTTGCA ACATGCAATT 
    CATGATACAA AATAGCTATG GCAAAGGTTT CGGGGAACTG GGAATTGGTA 
    GAGTACGCGG AGATTCGTTC AGTACCATGC ATCGGATCAG TTTGTAGGCT 
    GAGCGCCTCT GAGGTTCATA TCTTGGTGGT GATGTCAATC TGTAATGACT 
    GATGGTTGGT AGATTAGCAT ACGGTGGTAG TTTTGCAGGA TGTAGATTGG 
    TCTAGCTGAA AACATGGGCT CCTTGGAGGG AGATTGTGAC AGCATGCTGA 
    GTAGGTCTCA CCTCAGGTTT GGCTTAATTT CATGCTGAGT AGGTCTCCTC 
    TGTTTCAAAA AAAAAAGGTC GCAGCCTGAA ATACTTCTGT TCCATACACT 
    AGTTGCAGTA GAGCTTCAGA CAGTCCTCAC CATCAATCAA GATAAGTTGA 
    TGGGATTTTT GCG

    Gene models with high sequence identity

    1. AT1G65810.2 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 1e-18; Score: 93.20

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 6.5e-08
    HMMPanther DNA2/NAM7 HELICASE FAMILY 4.6e-06

    See the detailed result >

    AT1G65810.2

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell, seed; EXPRESSED DURING: E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G65780.1).
    Link
    InterPro Scan - TAIR